Commit 729eb4f9 authored by Shaun Warrington's avatar Shaun Warrington
Browse files

Updated readme to reflect changes in functionality

parent 488b6a93
......@@ -81,37 +81,37 @@ When running XTRACT with the '-species' option, a predefined list of tracts is a
| **Tract** | **Abbreviation** | **XTRACT tractName** |
| -------- | ------------ | ------------ |
| Arcuate Fasciculus | AF | af_l af_r |
| Acoustic Radiation | AR | ar_l ar_r |
| Anterior Thalamic Radiation | ATR | atr_l atr_r |
| Cingulum subsection : Dorsal | CBD | cbd_l cbd_r |
| Cingulum subsection : Peri-genual | CBP | cbp_l cbp_r |
| Cingulum subsection : Temporal | CBT | cbt_l cbt_r |
| Corticospinal Tract | CST | cst_l cst_r |
| Frontal Aslant | FA | fa_l fa_r |
| Arcuate Fasciculus | AF | af_l af_r |
| Acoustic Radiation | AR | ar_l ar_r |
| Anterior Thalamic Radiation | ATR | atr_l atr_r |
| Cingulum subsection : Dorsal | CBD | cbd_l cbd_r |
| Cingulum subsection : Peri-genual | CBP | cbp_l cbp_r |
| Cingulum subsection : Temporal | CBT | cbt_l cbt_r |
| Corticospinal Tract | CST | cst_l cst_r |
| Frontal Aslant | FA | fa_l fa_r |
| Forceps Major | FMA | fma |
| Forceps Minor | FMI | fmi |
| Fornix | FX | fx_l fx_r |
| Inferior Longitudinal Fasciculus | ILF | ilf_l ilf_r |
| Inferior Fronto-Occipital Fasciculus | IFO | ifo_l ifo_r |
| Fornix | FX | fx_l fx_r |
| Inferior Longitudinal Fasciculus | ILF | ilf_l ilf_r |
| Inferior Fronto-Occipital Fasciculus | IFO | ifo_l ifo_r |
| Middle Cerebellar Peduncle | MCP | mcp |
| Middle Longitudinal Fasciculus | MdLF | mdlf_l mdlf_r |
| Middle Longitudinal Fasciculus | MdLF | mdlf_l mdlf_r |
| Optic Radiation | OR | or_l or_r |
| Superior Thalamic Radiation | STR | str_l str_r |
| Superior Longitudinal Fasciculus 1 | SLF1 | slf1_l slf1_r |
| Superior Longitudinal Fasciculus 2 | SLF2 | slf2_l slf2_r |
| Superior Longitudinal Fasciculus 3 | SLF3 | slf3_l slf3_r |
| Superior Thalamic Radiation | STR | str_l str_r |
| Superior Longitudinal Fasciculus 1 | SLF1 | slf1_l slf1_r |
| Superior Longitudinal Fasciculus 2 | SLF2 | slf2_l slf2_r |
| Superior Longitudinal Fasciculus 3 | SLF3 | slf3_l slf3_r |
| Anterior Commissure | AC | ac |
| Uncinate Fasciculus | UF | uf_l uf_r |
| Vertical Occipital Fasciculus | VOF | vof_l vof_r |
| Uncinate Fasciculus | UF | uf_l uf_r |
| Vertical Occipital Fasciculus | VOF | vof_l vof_r |
You can run a subset of these tracts by providing a structure text file using the format:
<tractName> per line (default number of seeds taken from default structure file)
tractName, per line (default number of seeds taken from default structure file)
OR
<tractName> <nsamples> per line
tractName nsamples, per line
For an example, see $FSLDIR/etc/xtract_data/Human/structureList
......
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