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FSL
xtract
Commits
729eb4f9
Commit
729eb4f9
authored
Apr 28, 2020
by
Shaun Warrington
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Updated readme to reflect changes in functionality
parent
488b6a93
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README.md
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@@ -81,37 +81,37 @@ When running XTRACT with the '-species' option, a predefined list of tracts is a
|
**Tract**
|
**Abbreviation**
|
**XTRACT tractName**
|
| -------- | ------------ | ------------ |
| Arcuate Fasciculus | AF | af_l af_r |
| Acoustic Radiation | AR | ar_l ar_r |
| Anterior Thalamic Radiation | ATR | atr_l atr_r |
| Cingulum subsection : Dorsal | CBD | cbd_l cbd_r |
| Cingulum subsection : Peri-genual | CBP | cbp_l cbp_r |
| Cingulum subsection : Temporal | CBT | cbt_l cbt_r |
| Corticospinal Tract | CST | cst_l cst_r |
| Frontal Aslant | FA | fa_l fa_r |
| Arcuate Fasciculus | AF | af_l
af_r |
| Acoustic Radiation | AR | ar_l
ar_r |
| Anterior Thalamic Radiation | ATR | atr_l
atr_r |
| Cingulum subsection : Dorsal | CBD | cbd_l
cbd_r |
| Cingulum subsection : Peri-genual | CBP | cbp_l
cbp_r |
| Cingulum subsection : Temporal | CBT | cbt_l
cbt_r |
| Corticospinal Tract | CST | cst_l
cst_r |
| Frontal Aslant | FA | fa_l
fa_r |
| Forceps Major | FMA | fma |
| Forceps Minor | FMI | fmi |
| Fornix | FX | fx_l fx_r |
| Inferior Longitudinal Fasciculus | ILF | ilf_l ilf_r |
| Inferior Fronto-Occipital Fasciculus | IFO | ifo_l ifo_r |
| Fornix | FX | fx_l
fx_r |
| Inferior Longitudinal Fasciculus | ILF | ilf_l
ilf_r |
| Inferior Fronto-Occipital Fasciculus | IFO | ifo_l
ifo_r |
| Middle Cerebellar Peduncle | MCP | mcp |
| Middle Longitudinal Fasciculus | MdLF | mdlf_l mdlf_r |
| Middle Longitudinal Fasciculus | MdLF | mdlf_l
mdlf_r |
| Optic Radiation | OR | or_l or_r |
| Superior Thalamic Radiation | STR | str_l str_r |
| Superior Longitudinal Fasciculus 1 | SLF1 | slf1_l slf1_r |
| Superior Longitudinal Fasciculus 2 | SLF2 | slf2_l slf2_r |
| Superior Longitudinal Fasciculus 3 | SLF3 | slf3_l slf3_r |
| Superior Thalamic Radiation | STR | str_l
str_r |
| Superior Longitudinal Fasciculus 1 | SLF1 | slf1_l
slf1_r |
| Superior Longitudinal Fasciculus 2 | SLF2 | slf2_l
slf2_r |
| Superior Longitudinal Fasciculus 3 | SLF3 | slf3_l
slf3_r |
| Anterior Commissure | AC | ac |
| Uncinate Fasciculus | UF | uf_l uf_r |
| Vertical Occipital Fasciculus | VOF | vof_l vof_r |
| Uncinate Fasciculus | UF | uf_l
uf_r |
| Vertical Occipital Fasciculus | VOF | vof_l
vof_r |
You can run a subset of these tracts by providing a structure text file using the format:
<
tractName
>
per line (default number of seeds taken from default structure file)
tractName
,
per line (default number of seeds taken from default structure file)
OR
<
tractName
>
<
nsamples
>
per line
tractName
nsamples
,
per line
For an example, see $FSLDIR/etc/xtract_data/Human/structureList
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