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FSL
xtract
Commits
d296f663
Commit
d296f663
authored
Dec 05, 2019
by
Shaun Warrington
Browse files
Changed order of fsl_sub -T and -q args to overcome fsl_sub queue selection issue
parent
92d19c0f
Changes
1
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xtract
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d296f663
...
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@@ -338,9 +338,9 @@ chmod +x $commands
if
[
"x
$SGE_ROOT
"
!=
"x"
]
;
then
# Submit all commands to run in parallel on the cluster
# One job per tract for a CPU cluster, one job for all tracts for a GPU cluster.
if
[
$gpu
-eq
0
]
;
then
fsl_sub
-q
long.q
-T
2160
-l
$out
/logs
-N
xtract
-t
$commands
fsl_sub
-
T
2160
-
q
long.q
-l
$out
/logs
-N
xtract
-t
$commands
else
fsl_sub
-q
$FSLGECUDAQ
-T
300
-l
$out
/logs
-N
xtract
$commands
fsl_sub
-T
300
-q
$FSLGECUDAQ
-l
$out
/logs
-N
xtract
$commands
fi
else
# If no SGE, run locally
sh
$commands
...
...
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