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Commit d61fbdd6 authored by Saad Jbabdi's avatar Saad Jbabdi
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README.md
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### XTRACT is a command-line tool for running automated tractography. ## XTRACT is a command-line tool for running automated tractography.
XTRACT can be used to automatically extract a set of carefully dissected tracts in humans and macaques (other XTRACT can be used to automatically extract a set of carefully dissected tracts in humans and macaques (other
species to come). It can also be used to define one's own tractography protocols where all the user needs to do is to species to come). It can also be used to define one's own tractography protocols where all the user needs to do is to
...@@ -84,10 +84,10 @@ First you need to create a folder called 'mytrack' which you can add e.g. in the ...@@ -84,10 +84,10 @@ First you need to create a folder called 'mytrack' which you can add e.g. in the
Then create the following NIFTI files (with this exact naming) and copy them into mytrack: Then create the following NIFTI files (with this exact naming) and copy them into mytrack:
[Compulsory]: *Compulsory*:
- seed.nii.gz : a seed mask - seed.nii.gz : a seed mask
[Optional]: *Optional*:
- stop.nii.gz : a stop mask if required - stop.nii.gz : a stop mask if required
- exclude.nii.gz : an exclusion mask if required - exclude.nii.gz : an exclusion mask if required
- ONE of the following: - ONE of the following:
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