Commit dfac9802 authored by Shaun Warrington's avatar Shaun Warrington
Browse files

Updated to reflect xtract_viewer changes

parent fdaf8799
......@@ -152,12 +152,21 @@ The output of XTRACT is a folder that contrains tracts in separate folders. We p
/_/\_\ |_| |_| \_\/_/ \_\____| |_| \_/ |_|\___| \_/\_/ \___|_|
Usage:
xtract_viewer -dir <xtractDir> [options]
Usage:
xtract_viewer -dir <xtractDir> -species HUMAN [options]
xtract_viewer -dir <xtractDir> -species MACAQUE [options]
xtract_viewer -dir <xtractDir> -brain <PATH> [options]
Compulsory arguments:
-dir FOLDER Path to XTRACT output folder
-dir <FOLDER> Path to XTRACT output folder
And EITHER:
-species <SPECIES> One of HUMAN or MACAQUE
OR:
-brain <PATH> The brain image to use for the background overlay - must be in the same space as tracts.
Default is the FSL_HCP065_FA map for HUMAN and F99 T1 brain for MACAQUE
Optional arguments:
......@@ -166,7 +175,4 @@ Usage:
-thr NUMBER NUMBER The lower and upper thresholds applied to the tracts for viewing
Default = 0.001 0.1
-brain The brain image to use for the background overlay - must be in the same space as tracts.
Default is the FSL_HCP065_FA map
```
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment