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See merge request !16

This prevents issues like variables being passed as 'something; rm -rf *'
It also gives some robustness to spaces in file paths
Also good practice to use -n for non-empty strings and -z for empty strings

This also brings parallelism for none-GPU machines

Added -species CUSTOM option to allow tractography in any species

See merge request !15

Update Makefile

See merge request !14

XTRACT stats

See merge request !13

Refspace

See merge request !12

Tract subsets

See merge request !11

Added '-list' flag to show tract names. Added option to select a subset of the pre-defined tracts from either Human or Macaque - user provides structure file with tract names or tract names and nsamples. Small bug fixes

Update README.md

See merge request !10

Update README.md

See merge request !9

Update README.md

See merge request !8

Changed order of fsl_sub -T and -q args to overcome fsl_sub queue selection issue

See merge request !7

Patch 191119

See merge request !6

Add option to pass probtrackx options as a text file

See merge request !5

Adding ptx_options

See merge request !4

Typo

See merge request !3