Commit 12424348 authored by Shaun Warrington's avatar Shaun Warrington
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Merge branch 'patch-220120' into 'master'

Small changes to protocols

See merge request !4
parents 21d8be9a 9500c0cd
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# FSL - XTRACT
#
# WM structures file
#
# Format: <name> <# samples per seed voxel/1000>
# Format: <name> <# samples per voxel/1000>
#
# naming convention must correspond to subfolders of 'protocols'
#
# Arcuate Fascile
af_l 10
af_r 10
# Acoustic Radiation
ar_l 5
ar_r 5
# Anterior Thalamic Radiation
atr_l 1
atr_r 1
# Cingulum Bundle Dorsal
cbd_l 10
cbd_r 10
# Cingulum Bundle Parahippocampal
cbp_l 10
cbp_r 10
# Cingulum Bundle Temporal
cbt_l 10
cbt_r 10
# Corticospinal Tract
cst_l 3
cst_r 3
# Frontal Aslant
fa_l 3
fa_r 3
# Forceps Major and Minor
fma 0.5
fmi 0.5
# Fornix
fx_l 10
fx_r 10
# Inferior Longitudinal Fasciculus
ilf_l 3
ilf_r 3
# Inferior Fronto-occipital Fasciculus
ifo_l 3
ifo_r 3
# Middle Cerebellar Peduncle
mcp 3
# Medio-Dorsal Longitudinal Fasciculus
mdlf_l 5
mdlf_r 5
# Optic Radiation
or_l 10
or_r 10
# Superior Thalamic Radiation
str_l 1
str_r 1
# Superior Longitudinal Fasciculus 1,2,3
# Katherine test2 symm
slf1_l 10
slf1_r 10
slf2_l 10
......@@ -78,14 +45,8 @@ slf2_r 10
slf3_l 10
slf3_r 10
# Anterior Commissure
ac 5
# Uncinate Fasciculus
uf_l 1
uf_r 1
# Vertical Occipital Fasciculus
vof_l 10
vof_r 10
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# FSL - XTRACT
#
# WM structures file
#
# Format: <name> <# samples per seed voxel/1000>
# Format: <name> <# samples per voxel/1000>
#
# naming convention must correspond to subfolders of 'protocols'
#
# Arcuate Fascile
af_l 10
af_r 10
# Acoustic Radiation
ar_l 10
ar_r 10
# Anterior Thalamic Radiation
atr_l 1
atr_r 1
# Cingulum Bundle Dorsal
cbd_l 10
cbd_r 10
# Cingulum Bundle Parahippocampal
cbp_l 10
cbp_r 10
# Cingulum Bundle Temporal
cbt_l 10
cbt_r 10
# Corticospinal Tract
cst_l 3
cst_r 3
# Frontal Aslant
fa_l 3
fa_r 3
# Forceps Major and Minor
fma 0.5
fmi 0.5
# Fornix
fx_l 10
fx_r 10
# Inferior Longitudinal Fasciculus
ilf_l 3
ilf_r 3
# Inferior Fronto-occipital Fasciculus
ifo_l 3
ifo_r 3
# Middle Cerebellar Peduncle
mcp 3
# Medio-Dorsal Longitudinal Fasciculus
mdlf_l 5
mdlf_r 5
# Optic Radiation
or_l 10
or_r 10
# Superior Thalamic Radiation
str_l 1
str_r 1
# Superior Longitudinal Fasciculus 1,2,3
# Katherine test2 symm
slf1_l 10
slf1_r 10
slf2_l 10
......@@ -78,14 +45,8 @@ slf2_r 10
slf3_l 10
slf3_r 10
# Anterior Commissure
ac 5
# Uncinate Fasciculus
uf_l 1
uf_r 1
# Vertical Occipital Fasciculus
vof_l 10
vof_r 10
......@@ -12,8 +12,8 @@ Saad Jbabdi, Kathryn Bryant, Shaun Warrington, Marina Charquero-Ballester, Gwena
Citations:
Warrington S, Bryant K, Charquero-Ballester M, Douaud G, Jbabdi S*, Mars R*, Sotiropoulos SN* (in prep.)
Standardised protocols for automated tractography and connectivity blueprints in the human and macaque brain.
Warrington S, Bryant K, Charquero-Ballester M, Douaud G, Jbabdi S*, Mars R*, Sotiropoulos SN* (under review)
Standardised protocols for automated tractography in the human and macaque brain.
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