Commit 0dc58dc2 authored by William Clarke's avatar William Clarke
Browse files

Updata after NV comments.

parent 9cbd68e8
......@@ -21,6 +21,8 @@ The authors of the tool are happy to provide additional conversion routines if s
Use of spec2nii
The specific sub command (e.g. `twix` or `dicom`) must be the first argument.
To specify the creation of a JSON metadata file alongside a NIfTI file (recommended) use the :code:`-j` option with any other inputs.
File names can be specified with the :code:`-f` option and output directories with the :code:`-o` option.
......@@ -15,7 +15,7 @@ Before running FSL-MRS time domain data must be prepared in a complex 4D-NIFTI o
Example conversion::
spec2nii -f my_metab_file dicom -j metab.dcm
spec2nii dicom -f my_metab_file -j metab.dcm
This will convert the dicom file (metab.dcm) to a NIfTI file named my_metab_file.nii and because the -j option was specified, a JSON file called my_metab_file.json.
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