Partial bugfix for TIRLFile object ID redundancy problem.

.gitignore

+.idea/
+/tests/report/
+/build/
+/dist/
+/src/tirl/cmodules/finv.c
+/src/tirl/cmodules/fslinterpolator.cpp
+/src/tirl/cmodules/*.a
+/src/tirl/cmodules/*.so
+/tirl.egg-info/
+*__pycache__
+.*
+/pdf/
\ No newline at end of file

src/tirl/timage.py

@@ -1819,19 +1819,28 @@ class TImage(TField):
         if self.mask is not None:
             mask = mask.reshape(target_domain.shape)
 
+<<<<<<< HEAD
         # Bugfix: the voxel shape might change upon evaluation (2D/3D case!)
         if self.order == TENSOR_MAJOR:
             taxes = tuple(range(self.tdim))
         else:
             taxes = tuple(range(data.ndim - self.tdim, data.ndim))
 
+=======
+>>>>>>> 254f007b0827c68168480bd669bfea8b135a97e7
         # Mask points that are outside the voxel grid
         # Added on 13 August 2020
         if ts.TIMAGE_MASK_MISSING_DATA:
             if mask is None:
                 mask = np.ones(target_domain.shape, dtype=np.float32)
+<<<<<<< HEAD
             if taxes:
                 indices = np.flatnonzero(np.all(data == np.inf, axis=taxes))
+=======
+            if self.taxes:
+                indices = np.flatnonzero(np.all(
+                    data == np.inf, axis=self.taxes))
+>>>>>>> 254f007b0827c68168480bd669bfea8b135a97e7
             else:
                 indices = np.flatnonzero(data == np.inf)
             data[data == np.inf] = ts.FILL_VALUE
@@ -1849,6 +1858,14 @@ class TImage(TField):
         # Create new TImage
         new_name = "%s.%s" % (self.name, target_domain.name)
 
+<<<<<<< HEAD
+=======
+        # Bugfix: the voxel shape might change upon evaluation (2D/3D case!)
+        if self.order == TENSOR_MAJOR:
+            taxes = tuple(range(self.tdim))
+        else:
+            taxes = tuple(range(data.ndim - self.tdim, data.ndim))
+>>>>>>> 254f007b0827c68168480bd669bfea8b135a97e7
         # ipc = self.interpolator.__class__
         # ip = self.interpolator
         # interpolator = ipc(data, ip.threads, ip.verbose, **ip.kwargs)

src/tirl/tirlobject.py

@@ -138,16 +138,28 @@ class TIRLObject(object, metaclass=InstanceCounterMeta):
         if isinstance(node, dict):
             iterator = ((key, node[key]) for key in sorted(node.keys()))
             for key, item in iterator:
+<<<<<<< HEAD
+=======
+            # for key, item in node.items():
+>>>>>>> 254f007b0827c68168480bd669bfea8b135a97e7
                 res = TIRLObject.hload(item, objects)
                 if isinstance(res, TIRLObject):
                     node[key] = res
             if ("type" in node.keys()) and ("id" in node.keys()):
+<<<<<<< HEAD
                 obj = getattr(locate(node["type"]), "_load")(node)
                 if node["id"] not in objects.keys():
                     objects.update({node["id"]: obj})
                     return objects[node["id"]]
                 else:
                     return obj
+=======
+                if node["id"] not in objects.keys():
+                    # obj = locate(node["type"])._load(node)
+                    obj = getattr(locate(node["type"]), "_load")(node)
+                    objects.update({node["id"]: obj})
+                return objects[node["id"]]
+>>>>>>> 254f007b0827c68168480bd669bfea8b135a97e7
         elif isinstance(node, list):
             for key, item in enumerate(node):
                 res = TIRLObject.hload(item, objects)