README.md

# Olfactory bulb (OB) analysis pipeline
Main scripts:
1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF
2) `cmore_run_warpLabels2Ind.sh`: warps the OB labels back to the individuals

MMORF: [link to gitlab or singularity container?]

The template and olfactory bulb labels are available for download here: [working on best way to share those]