README.md 385 Bytes
Newer Older
Ludovica Griffanti's avatar
Ludovica Griffanti committed
1
2
3
4
5
# Olfactory bulb (OB) analysis pipeline
Main scripts:
1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF
2) `cmore_run_warpLabels2Ind.sh`: warps the OB labels back to the individuals

Christoph Arthofer's avatar
Christoph Arthofer committed
6
MMORF: https://git.fmrib.ox.ac.uk/flange/mmorf_beta 
Ludovica Griffanti's avatar
Ludovica Griffanti committed
7
8
9

The template and olfactory bulb labels are available for download here: [working on best way to share those]