Commit aa6d68f8 authored by Christoph Arthofer's avatar Christoph Arthofer
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Update README.md

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# Olfactory bulb (OB) analysis pipeline # Olfactory bulb (OB) analysis pipeline
Main scripts: Main scripts:
1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF 1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF and warps masks from template space back to individuals' native spaces
2) `cmore_run_warpLabels2Ind.sh`: warps the OB labels back to the individuals 2) `cmore_segSize.py`: calculates the volume of the masks in individuals' native spaces
MMORF: https://git.fmrib.ox.ac.uk/flange/mmorf_beta MMORF: https://git.fmrib.ox.ac.uk/flange/mmorf_beta
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