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Ludovica Griffanti
C-MORE brain MRI
Commits
d7747ec6
Commit
d7747ec6
authored
Jun 16, 2021
by
Christoph Arthofer
Browse files
Delete cmore_invertAffine.sh
parent
ced5b36d
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1
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OB_pipeline/cmore_invertAffine.sh
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ced5b36d
#!/bin/bash
#$ -cwd -j y
#$ -r y
echo
`
date
`
: Executing task
${
SGE_TASK_ID
}
of job
${
JOB_ID
}
on
`
hostname
`
as user
${
USER
}
echo
SGE_TASK_FIRST
=
${
SGE_TASK_FIRST
}
,
SGE_TASK_LAST
=
${
SGE_TASK_LAST
}
,
SGE_TASK_STEPSIZE
=
${
SGE_TASK_STEPSIZE
}
.
~/.bash_profile
.
$MODULESHOME
/init/bash
module load fsl/6.0.3
ID_PATH
=
$1
AFF_PATH
=
$2
INV_AFF_PATH
=
$3
IMG_IN_ID
=
$(
awk
'NR=='
${
SGE_TASK_ID
}
${
ID_PATH
}
)
printf
-v
AFF_PATH
${
AFF_PATH
}
${
IMG_IN_ID
}
printf
-v
INV_AFF_PATH
${
INV_AFF_PATH
}
${
IMG_IN_ID
}
echo
"convert_xfm -omat
${
INV_AFF_PATH
}
-inverse
${
AFF_PATH
}
"
convert_xfm
-omat
${
INV_AFF_PATH
}
-inverse
${
AFF_PATH
}
rv
=
$?
echo
`
date
`
: task
complete
exit
$rv
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