Local but unmodified configargparse.

fsl_mrs/scripts/fsl_mrs

@@ -10,7 +10,7 @@
 
 # Quick imports
 #import argparse
-import configargparse
+from fsl_mrs.aux import configargparse
 
 from fsl_mrs import __version__
 from fsl_mrs.utils.splash import splash
@@ -101,7 +101,7 @@ def main():
     
     # Parse command-line arguments
     args = p.parse_args()
-
+    breakpoint()
     # Output kickass splash screen
     if args.verbose:
         splash(logo='mrs')

setup.py

@@ -12,7 +12,7 @@ setup(name='FSL_MRS',
       author=['Saad Jbabdi','William Clarke'],
       author_email=['saad@fmrib.ox.ac.uk','william.clarke@ndcn.ox.ac.uk'],
       url='www.fmrib.ox.ac.uk/fsl',
-      packages=['fsl_mrs','fsl_mrs.utils','fsl_mrs.utils.mrs_io','fsl_mrs.utils.stats','fsl_mrs.utils.preproc','fsl_mrs.denmatsim','fsl_mrs.mmbasis'],
+      packages=['fsl_mrs','fsl_mrs.utils','fsl_mrs.utils.mrs_io','fsl_mrs.utils.stats','fsl_mrs.utils.preproc','fsl_mrs.denmatsim','fsl_mrs.mmbasis','fsl_mrs.aux'],
       package_data={'fsl_mrs.utils':['mrs_report_template.html','metabolites.pickle'],'fsl_mrs.denmatsim':['spinSystems.json'],
       'fsl.mmbasis':['mmbasis.json'],
       'fsl_mrs.utils.preproc':['templates/*.html']},