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Michiel Cottaar
fsl_mrs
Commits
d3cd56a5
Commit
d3cd56a5
authored
Jun 04, 2020
by
Saad Jbabdi
Browse files
prettify svs voxel location figure
parent
6f254386
Changes
1
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Inline
Side-by-side
fsl_mrs/scripts/fsl_mrs
View file @
d3cd56a5
...
...
@@ -348,7 +348,9 @@ def main():
datatype
=
mrs_io
.
check_datatype
(
args
.
data
)
if
datatype
==
'NIFTI'
:
fig
=
plotting
.
plot_world_orient
(
args
.
t1
,
args
.
data
)
fig
.
savefig
(
os
.
path
.
join
(
args
.
output
,
'voxel_location.png'
))
fig
.
tight_layout
()
fig
.
savefig
(
os
.
path
.
join
(
args
.
output
,
'voxel_location.png'
),
bbox_inches
=
'tight'
,
facecolor
=
'k'
)
# Create short HTML report
#fig = plotting.plotly_fit(mrs,res,ppmlim=ppmlim,proj='abs')
...
...
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