Commits · c79ceb9cfcb657e8878a21ab0f2f21349ffb2512 · Michiel Cottaar / fsl_mrs

15 Mar, 2021 2 commits
- Update tests and documentation with water scaling reference options. · 0940e592
  William Clarke authored Mar 15, 2021
  
  0940e592
- Typo in report. · 88610bed
  William Clarke authored Mar 15, 2021
  
  88610bed
14 Mar, 2021 2 commits
- Add plot, update changelog etc. Move back to numpy 1.19 as 1.20 only availible... · 7590c2ce
  William Clarke authored Mar 14, 2021
```
Add plot, update changelog etc. Move back to numpy 1.19 as 1.20 only availible from condaforge. Update scripts to pass tests.
```
  7590c2ce
- TNew quantification structure with fitted water and T1 relaxation. · 076399d2
  William Clarke authored Mar 14, 2021
  
  076399d2
11 Mar, 2021 3 commits
- All SNR measures now take max(abs(real())) rather than max(real()) to deal with negative peaks. · 0443d171
  William Clarke authored Mar 11, 2021
  
  0443d171
- Update to data reader to deal with dots in paths · 25d9cd96
  William Clarke authored Mar 11, 2021
  
  25d9cd96
- Tweaks to mrsi and sythetic from basis code. Numpy>1.20 for potential sliding window code. · eb52cb94
  William Clarke authored Mar 11, 2021
  
  eb52cb94
18 Feb, 2021 1 commit
- Updates from working through NV's data and some dynamic fitting fixes. · e4266bb9
  William Clarke authored Feb 18, 2021
  
  e4266bb9
07 Feb, 2021 1 commit
- Using autopep8 to get all formatting sorted. · 78712745
  William Clarke authored Feb 07, 2021
  
  78712745
05 Feb, 2021 1 commit
- Update example usage notebooks. · d45eedcc
  William Clarke authored Feb 05, 2021
  
  d45eedcc
04 Feb, 2021 1 commit
- Minor tweaks. · 73a4430c
  William Clarke authored Feb 04, 2021
  
  73a4430c
17 Jan, 2021 1 commit
- All tests passing. · 659ec713
  William Clarke authored Jan 17, 2021
  
  659ec713
15 Jan, 2021 2 commits
- fsl_mrs_preproc modified and test passes. · 96bc72d4
  William Clarke authored Jan 15, 2021
  
  96bc72d4
- Rework of mrs_io for new format. test_scripts_proc passes. · 796eae2c
  William Clarke authored Jan 15, 2021
  
  796eae2c
14 Jan, 2021 3 commits
- Finished port of fsl_mrs_proc. Tests needed. · c47449b4
  William Clarke authored Jan 14, 2021
  
  c47449b4
- Flake formatting on rest of preproc. · c4d41793
  William Clarke authored Jan 14, 2021
  
  c4d41793
- Translation layer for NIFTI MRS processing complete. · 61089ace
  William Clarke authored Jan 14, 2021
  
  61089ace
13 Jan, 2021 3 commits
- More intermediate commits. · f4632295
  William Clarke authored Jan 13, 2021
  
  f4632295
- Intermediate commit. · 88d0428b
  William Clarke authored Jan 13, 2021
  
  88d0428b
- Move files around. · 6ec00747
  William Clarke authored Jan 13, 2021
  
  6ec00747
11 Jan, 2021 1 commit
- Fix parse_metab_groups behaviour · fde5c9c7
  alexcraven authored Jan 11, 2021
```
parse_metab_groups failed for lists containing a single entry with '+' notation
```
  fde5c9c7
17 Dec, 2020 2 commits
- Clean up of utils misc. · 762b292a
  William Clarke authored Dec 17, 2020
  
  762b292a
- update dynamic __init__. · 6379d358
  William Clarke authored Dec 17, 2020
  
  6379d358
02 Dec, 2020 1 commit
- Changes to have dynMRS work with Newton method · c18b980d
  Saad Jbabdi authored Dec 02, 2020
  
  c18b980d
30 Nov, 2020 3 commits
- added slider plot for dynMRS · 4892c16f
  Saad Jbabdi authored Nov 30, 2020
  
  4892c16f
- fixed divide by zero errors. · 74fe7958
  William Clarke authored Nov 30, 2020
  
  74fe7958
- Add docs and tests. · 590c0c38
  William Clarke authored Nov 30, 2020
  
  590c0c38
29 Nov, 2020 1 commit
- First commit of dynamic models. Tests and some improvements needed. · 578ddbb4
  William Clarke authored Nov 29, 2020
  
  578ddbb4
27 Nov, 2020 2 commits
- Added baseline to synthetic from basis. · 0f4714da
  William Clarke authored Nov 27, 2020
  
  0f4714da
- Changes related to dynMRS and VariableMapping · 33708a85
  Saad Jbabdi authored Nov 27, 2020
  
  33708a85
24 Nov, 2020 1 commit
- Fixes for NAN values in qc values. Improved fsl_mrsi test conditions. · 768dca61
  William Clarke authored Nov 24, 2020
  
  768dca61
10 Nov, 2020 2 commits
- Git add additional scaling option to results and fsl_mrs to allow for fixed... · 6e3eef11
  William Clarke authored Nov 10, 2020
```
Git add additional scaling option to results and fsl_mrs to allow for fixed water cencentration scaling.
```
  6e3eef11
- Fix bugs introduced into plotting by core rewrite. · 3dc441ef
  William Clarke authored Nov 10, 2020
  
  3dc441ef
05 Nov, 2020 1 commit
- Fix central frequency for synthetically made spectra and in proc tests. · 353dbaae
  William Clarke authored Nov 05, 2020
  
  353dbaae
28 Oct, 2020 1 commit
- Rewrite of MRS class, tests for MRS and introduction of different nuclei. · 23d58004
  William Clarke authored Oct 28, 2020
  
  23d58004
27 Oct, 2020 1 commit
- Small changes found after V1.0.5 · b432c2d6
  William Clarke authored Oct 27, 2020
  
  b432c2d6
09 Oct, 2020 1 commit
- extended fitting tests · 80717982
  William Clarke authored Oct 09, 2020
  
  80717982
08 Oct, 2020 2 commits
- Priors now stored in constants. · a5dd7d18
  William Clarke authored Oct 08, 2020
  
  a5dd7d18
- Change default to voigt, add option to mcmc optimise baseline. · 75725368
  William Clarke authored Oct 08, 2020
  
  75725368
30 Sep, 2020 1 commit
- Add information on constant values in code. · 87848dcd
  William Clarke authored Sep 30, 2020
  
  87848dcd