Commits · master · Michiel Cottaar / fsl_mrs

15 Mar, 2021 5 commits
- Merge branch 'master' into 'master' · c79ceb9c
  William Clarke authored Mar 15, 2021
```
Master

See merge request fsl/fsl_mrs!17
```
  c79ceb9c
- Update changelog with new version number. · c71d9d85
  William Clarke authored Mar 15, 2021
  
  c71d9d85
- Update tests and documentation with water scaling reference options. · 0940e592
  William Clarke authored Mar 15, 2021
  
  0940e592
- Update docs · 4581561a
  William Clarke authored Mar 15, 2021
  
  4581561a
- Typo in report. · 88610bed
  William Clarke authored Mar 15, 2021
  
  88610bed
14 Mar, 2021 3 commits
- Update changelog. · 5b2b0ff5
  William Clarke authored Mar 14, 2021
  
  5b2b0ff5
- Add plot, update changelog etc. Move back to numpy 1.19 as 1.20 only availible... · 7590c2ce
  William Clarke authored Mar 14, 2021
```
Add plot, update changelog etc. Move back to numpy 1.19 as 1.20 only availible from condaforge. Update scripts to pass tests.
```
  7590c2ce
- TNew quantification structure with fitted water and T1 relaxation. · 076399d2
  William Clarke authored Mar 14, 2021
  
  076399d2
11 Mar, 2021 3 commits
- All SNR measures now take max(abs(real())) rather than max(real()) to deal with negative peaks. · 0443d171
  William Clarke authored Mar 11, 2021
  
  0443d171
- Update to data reader to deal with dots in paths · 25d9cd96
  William Clarke authored Mar 11, 2021
  
  25d9cd96
- Tweaks to mrsi and sythetic from basis code. Numpy>1.20 for potential sliding window code. · eb52cb94
  William Clarke authored Mar 11, 2021
  
  eb52cb94
18 Feb, 2021 9 commits
- Merge branch 'master' into 'master' · c6dc31cc
  William Clarke authored Feb 18, 2021
```
V1.1.0 NIfTI-MRS

See merge request fsl/fsl_mrs!16
```
  c6dc31cc
- Update yaml to stop tests on releases. · 458c77f3
  William Clarke authored Feb 18, 2021
  
  458c77f3
- Update readme. · 641a24e3
  William Clarke authored Feb 18, 2021
  
  641a24e3
- Flake8 on scripts. · c8e08ec4
  William Clarke authored Feb 18, 2021
  
  c8e08ec4
- More doc. · bb4d9300
  William Clarke authored Feb 18, 2021
  
  bb4d9300
- Update docs. · 8546628d
  William Clarke authored Feb 18, 2021
  
  8546628d
- Add integration test for mrs_info. · 728c638f
  William Clarke authored Feb 18, 2021
  
  728c638f
- Add mrs_info command. · a56da37b
  William Clarke authored Feb 18, 2021
  
  a56da37b
- Updates from working through NV's data and some dynamic fitting fixes. · e4266bb9
  William Clarke authored Feb 18, 2021
  
  e4266bb9
07 Feb, 2021 2 commits
- Using autopep8 to get all formatting sorted. · 78712745
  William Clarke authored Feb 07, 2021
  
  78712745
- Merge branch 'nifti_mrs' into 'master' · 539a4f50
  William Clarke authored Feb 07, 2021
```
NIfTI-MRS

See merge request wclarke/fsl_mrs!3
```
  539a4f50
06 Feb, 2021 4 commits
- Merge branch 'master' of https://git.fmrib.ox.ac.uk/fsl/fsl_mrs into nifti_mrs · a2269997
  William Clarke authored Feb 06, 2021
```
Incorporate Paul's CI changes merged into fsl/fsl_mrs
```
  a2269997
- Merge branch 'ci/fsl-ci-rules' into 'master' · 11edbcf4
  William Clarke authored Feb 06, 2021
```
CI: New common test stage, not used in this repo, but has to be defined

See merge request fsl/fsl_mrs!15
```
  11edbcf4
- CI: New common test stage, not used in this repo, but has to be defined · fd2c0cd6
  Paul McCarthy authored Feb 06, 2021
  
  fd2c0cd6
- Doc updates for NIfTI-MRS. · 231523b6
  William Clarke authored Feb 06, 2021
  
  231523b6
05 Feb, 2021 5 commits
- Update example usage notebooks. · d45eedcc
  William Clarke authored Feb 05, 2021
  
  d45eedcc
- See previous. · 250bb289
  William Clarke authored Feb 05, 2021
  
  250bb289
- Copyright and flake8 on all tests. · 7e99549b
  William Clarke authored Feb 05, 2021
  
  7e99549b
- Add test for core NIFTI_MRS. · 86515805
  William Clarke authored Feb 05, 2021
  
  86515805
- Add results_to_spectrum script and tests. · 71bbb316
  William Clarke authored Feb 05, 2021
  
  71bbb316
04 Feb, 2021 1 commit
- Minor tweaks. · 73a4430c
  William Clarke authored Feb 04, 2021
  
  73a4430c
17 Jan, 2021 2 commits
- Intermittent issue with hlsvd on phase correction of wref. · 6f2cff19
  William Clarke authored Jan 17, 2021
  
  6f2cff19
- All tests passing. · 659ec713
  William Clarke authored Jan 17, 2021
  
  659ec713
15 Jan, 2021 2 commits
- fsl_mrs_preproc modified and test passes. · 96bc72d4
  William Clarke authored Jan 15, 2021
  
  96bc72d4
- Rework of mrs_io for new format. test_scripts_proc passes. · 796eae2c
  William Clarke authored Jan 15, 2021
  
  796eae2c
14 Jan, 2021 3 commits
- Finished port of fsl_mrs_proc. Tests needed. · c47449b4
  William Clarke authored Jan 14, 2021
  
  c47449b4
- Flake formatting on rest of preproc. · c4d41793
  William Clarke authored Jan 14, 2021
  
  c4d41793
- Translation layer for NIFTI MRS processing complete. · 61089ace
  William Clarke authored Jan 14, 2021
  
  61089ace
13 Jan, 2021 1 commit
- More intermediate commits. · f4632295
  William Clarke authored Jan 13, 2021
  
  f4632295