diff --git a/fsl/__init__.py b/fsl/__init__.py index d0a5a517ec659fafefaa8b1d582ff5369c2e55fc..1a3917dc763ec2e28bb5f21fe00ebe71154590fe 100644 --- a/fsl/__init__.py +++ b/fsl/__init__.py @@ -13,6 +13,7 @@ following sub-packages: fsl.data fsl.utils fsl.scripts + fsl.transform fsl.version fsl.wrappers @@ -22,4 +23,4 @@ following sub-packages: for details. """ -__path__ = __import__('pkgutil').extend_path(__path__, __name__) +__path__ = __import__('pkgutil').extend_path(__path__, __name__) # noqa diff --git a/fsl/data/image.py b/fsl/data/image.py index ac9f514e127ccebe777c98e6f00d816b6da61325..03dfc48a0aae0e91108861954f6d1bc6b61c629b 100644 --- a/fsl/data/image.py +++ b/fsl/data/image.py @@ -224,7 +224,7 @@ class Nifti(notifier.Notifier, meta.Meta): =============== ======================================================== ``'transform'`` The affine transformation matrix has changed. This topic will occur when the :meth:`voxToWorldMat` is changed. - ``'header A header field has changed. This will occur when the + ``'header'`` A header field has changed. This will occur when the :meth:`intent` is changed. =============== ======================================================== """ # noqa diff --git a/fsl/transform/nonlinear.py b/fsl/transform/nonlinear.py index 389b137d3b7e35e2775b4aff2964d83f23bf571b..3c6bb9b033c0a38f35e45b106417191e301d9e9c 100644 --- a/fsl/transform/nonlinear.py +++ b/fsl/transform/nonlinear.py @@ -139,7 +139,7 @@ class NonLinearTransform(fslimage.Image): reference space. :arg from_: Reference image space that ``coords`` are defined in :arg to: Source image space to transform ``coords`` into - :returns ``coords``, transformed into the source image space + :returns: ``coords``, transformed into the source image space """ raise NotImplementedError() @@ -217,7 +217,7 @@ class DisplacementField(NonLinearTransform): reference space. :arg from_: Reference image space that ``coords`` are defined in :arg to: Source image space to transform ``coords`` into - :returns ``coords``, transformed into the source image space + :returns: ``coords``, transformed into the source image space """ if from_ is None: from_ = self.refSpace @@ -400,11 +400,11 @@ class CoefficientField(NonLinearTransform): :arg to: Source image space to transform ``coords`` into - :returns ``coords``, transformed into the source image space - :arg premat: If ``True``, the inverse :meth:`srcToRefMat` is applied to the coordinates after the displacements have been addd. + + :returns: ``coords``, transformed into the source image space """ df = self.asDisplacementField(premat=premat) return df.transform(coords, from_, to) @@ -629,7 +629,7 @@ def coefficientFieldToDisplacementField(field, :arg field: :class:`CoefficientField` to convert - :arg dispType: The type of displcaement field - either ``'relative'`` (the + :arg dispType: The type of displacement field - either ``'relative'`` (the default) or ``'absolute'``. :arg premat: If ``True`` (the default), the :meth:`srcToRefMat` is