From 2e47fd5088acbd1445710b07f107d712d509cee6 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Sat, 28 Mar 2020 17:52:02 +0000
Subject: [PATCH] TEST: deprecated module
---
tests/test_scripts/test_resample_image.py | 18 +++++++++---------
1 file changed, 9 insertions(+), 9 deletions(-)
diff --git a/tests/test_scripts/test_resample_image.py b/tests/test_scripts/test_resample_image.py
index ed7e944b5..01063067d 100644
--- a/tests/test_scripts/test_resample_image.py
+++ b/tests/test_scripts/test_resample_image.py
@@ -8,7 +8,7 @@ import pytest
import fsl.scripts.resample_image as resample_image
-import fsl.utils.transform as transform
+import fsl.transform.affine as affine
from fsl.utils.tempdir import tempdir
from fsl.data.image import Image
@@ -22,22 +22,22 @@ def test_resample_image_shape():
resample_image.main('image resampled -s 20,20,20'.split())
res = Image('resampled')
- expv2w = transform.concat(
+ expv2w = affine.concat(
img.voxToWorldMat,
- transform.scaleOffsetXform([0.5, 0.5, 0.5], 0))
+ affine.scaleOffsetXform([0.5, 0.5, 0.5], 0))
assert np.all(np.isclose(res.shape, (20, 20, 20)))
assert np.all(np.isclose(res.pixdim, (0.5, 0.5, 0.5)))
assert np.all(np.isclose(res.voxToWorldMat, expv2w))
assert np.all(np.isclose(
- np.array(transform.axisBounds(res.shape, res.voxToWorldMat)) - 0.25,
- transform.axisBounds(img.shape, img.voxToWorldMat)))
+ np.array(affine.axisBounds(res.shape, res.voxToWorldMat)) - 0.25,
+ affine.axisBounds(img.shape, img.voxToWorldMat)))
resample_image.main('image resampled -s 20,20,20 -o corner'.split())
res = Image('resampled')
assert np.all(np.isclose(
- transform.axisBounds(res.shape, res.voxToWorldMat),
- transform.axisBounds(img.shape, img.voxToWorldMat)))
+ affine.axisBounds(res.shape, res.voxToWorldMat),
+ affine.axisBounds(img.shape, img.voxToWorldMat)))
def test_resample_image_shape_4D():
@@ -65,9 +65,9 @@ def test_resample_image_dim():
resample_image.main('image resampled -d 0.5,0.5,0.5'.split())
res = Image('resampled')
- expv2w = transform.concat(
+ expv2w = affine.concat(
img.voxToWorldMat,
- transform.scaleOffsetXform([0.5, 0.5, 0.5], 0))
+ affine.scaleOffsetXform([0.5, 0.5, 0.5], 0))
assert np.all(np.isclose(res.shape, (20, 20, 20)))
assert np.all(np.isclose(res.pixdim, (0.5, 0.5, 0.5)))
--
GitLab