From cd79e13ea177e021480420de6720788a8bb68c19 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Wed, 3 Jul 2019 07:23:01 +0100
Subject: [PATCH] RF: Newly created images are only considered "saved" if they
were created from a file name. Bitmap.asImage passes dataSource through to
Image.__init__
---
fsl/data/bitmap.py | 4 +++-
fsl/data/image.py | 5 +++--
2 files changed, 6 insertions(+), 3 deletions(-)
diff --git a/fsl/data/bitmap.py b/fsl/data/bitmap.py
index 0e5c9b413..299534f54 100644
--- a/fsl/data/bitmap.py
+++ b/fsl/data/bitmap.py
@@ -167,4 +167,6 @@ class Bitmap(object):
data = np.array(data, order='F', copy=False)
- return fslimage.Image(data, name=self.name)
+ return fslimage.Image(data,
+ name=self.name,
+ dataSource=self.dataSource)
diff --git a/fsl/data/image.py b/fsl/data/image.py
index 417a0445c..1bf901c28 100644
--- a/fsl/data/image.py
+++ b/fsl/data/image.py
@@ -809,6 +809,7 @@ class Image(Nifti):
"""
nibImage = None
+ saved = False
if indexed is not False:
warnings.warn('The indexed argument is deprecated '
@@ -841,10 +842,10 @@ class Image(Nifti):
# The image parameter may be the name of an image file
if isinstance(image, six.string_types):
-
image = op.abspath(addExt(image))
nibImage = nib.load(image, **kwargs)
dataSource = image
+ saved = True
# Or a numpy array - we wrap it in a nibabel image,
# with an identity transformation (each voxel maps
@@ -906,7 +907,7 @@ class Image(Nifti):
self.__dataSource = dataSource
self.__threaded = threaded
self.__nibImage = nibImage
- self.__saveState = dataSource is not None
+ self.__saveState = saved
self.__imageWrapper = imagewrapper.ImageWrapper(self.nibImage,
self.name,
loadData=loadData,
--
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