From dfa51e0feff48f0a357c134450d916e137804a06 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Fri, 27 Mar 2020 13:30:54 +0000
Subject: [PATCH] TEST: SubmitParams no work if fsl_sub doesn't exist
---
tests/test_fslsub.py | 47 +++++++++++++++++++++++---------------------
1 file changed, 25 insertions(+), 22 deletions(-)
diff --git a/tests/test_fslsub.py b/tests/test_fslsub.py
index 93e96a236..40d766828 100644
--- a/tests/test_fslsub.py
+++ b/tests/test_fslsub.py
@@ -147,28 +147,31 @@ def test_add_to_parser():
('-F', ),
('-s', 'pename,thread')
]
- for flag in test_flags:
- for include in (None, [flag[0]]):
- parser = argparse.ArgumentParser("test parser")
- fslsub.SubmitParams.add_to_parser(parser, include=include)
- args = parser.parse_args(flag)
- submitter = fslsub.SubmitParams.from_args(args)
- assert submitter.as_flags() == flag
-
- parser = argparse.ArgumentParser("test parser")
- parser.add_argument('some_input')
- fslsub.SubmitParams.add_to_parser(parser, include=None)
- all_flags = tuple(part for flag in test_flags for part in flag)
- args = parser.parse_args(('input', ) + all_flags)
- assert args.some_input == 'input'
- submitter = fslsub.SubmitParams.from_args(args)
- assert len(all_flags) == len(submitter.as_flags())
- for flag in test_flags:
- res_flags = submitter.as_flags()
- assert flag[0] in res_flags
- start_index = res_flags.index(flag[0])
- for idx, part in enumerate(flag):
- assert res_flags[idx + start_index] == part
+ with fslsub_mockFSLDIR():
+ for flag in test_flags:
+ for include in (None, [flag[0]]):
+ parser = argparse.ArgumentParser("test parser")
+ fslsub.SubmitParams.add_to_parser(parser, include=include)
+ args = parser.parse_args(flag)
+ submitter = fslsub.SubmitParams.from_args(args)
+ assert submitter.as_flags() == flag
+
+ with fslsub_mockFSLDIR():
+ parser = argparse.ArgumentParser("test parser")
+ parser.add_argument('some_input')
+ fslsub.SubmitParams.add_to_parser(parser, include=None)
+ all_flags = tuple(part for flag in test_flags for part in flag)
+ args = parser.parse_args(('input', ) + all_flags)
+ assert args.some_input == 'input'
+ submitter = fslsub.SubmitParams.from_args(args)
+ assert len(all_flags) == len(submitter.as_flags())
+
+ for flag in test_flags:
+ res_flags = submitter.as_flags()
+ assert flag[0] in res_flags
+ start_index = res_flags.index(flag[0])
+ for idx, part in enumerate(flag):
+ assert res_flags[idx + start_index] == part
def myfunc():
--
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