From e88cec626d5f6cccbf654c0536df94a45d5b843b Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Wed, 17 Oct 2018 15:25:32 +0100
Subject: [PATCH] MNT: renamed extract_noise to fsl_ents
---
fsl/scripts/extract_noise.py | 6 +++---
setup.py | 2 +-
tests/test_extract_noise.py | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/fsl/scripts/extract_noise.py b/fsl/scripts/extract_noise.py
index 087aceb81..bb4f5025e 100644
--- a/fsl/scripts/extract_noise.py
+++ b/fsl/scripts/extract_noise.py
@@ -5,7 +5,7 @@
#
# Author: Paul McCarthy <pauldmccarthy@gmail.com>
#
-"""This module defines the ``extract_noise`` script, for extracting component
+"""This module defines the ``fsl_ents`` script, for extracting component
time series from a MELODIC ``.ica`` directory.
"""
@@ -28,7 +28,7 @@ with warnings.catch_warnings():
DTYPE = np.float64
-name = "extract_noise"
+name = "fsl_ents"
desc = 'Extract component time series from a MELODIC .ica directory'
usage = """
{name}: {desc}
@@ -204,7 +204,7 @@ def loadConfoundFiles(conffiles, npts):
def main(argv=None):
- """Entry point for the ``extract_noise`` script.
+ """Entry point for the ``fsl_ents`` script.
Identifies component time series to extract, extracts them, loads extra
confound files, and saves them out to a file.
diff --git a/setup.py b/setup.py
index 69419aeb0..ffcf92bb1 100644
--- a/setup.py
+++ b/setup.py
@@ -124,7 +124,7 @@ setup(
'imglob = fsl.scripts.imglob:main',
'atlasq = fsl.scripts.atlasq:main',
'atlasquery = fsl.scripts.atlasq:atlasquery_emulation',
- 'extract_noise = fsl.scripts.extract_noise:main',
+ 'fsl_ents = fsl.scripts.extract_noise:main',
]
}
)
diff --git a/tests/test_extract_noise.py b/tests/test_extract_noise.py
index 6c1e4b8ed..7bb4b9917 100644
--- a/tests/test_extract_noise.py
+++ b/tests/test_extract_noise.py
@@ -95,7 +95,7 @@ def test_extract_noise():
melmix = np.random.randint(1, 100, (100, 20))
np.savetxt('melodic_mix', melmix)
- sys.argv = ['extract_noise', td] + '-o out.txt 1 2 3'.split()
+ sys.argv = ['fsl_ents', td] + '-o out.txt 1 2 3'.split()
extn.main()
assert np.all(np.loadtxt('out.txt') == melmix[:, :3])
--
GitLab