diff --git a/CHANGELOG.rst b/CHANGELOG.rst index ab5db7f35b06d1a05f4a921be4517f00167fc52e..a07441356ec65d6c963678867b2d9d0e27d0b838 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -12,6 +12,18 @@ Added * New :mod:`.image.roi` module, for exracting an ROI of an image, or expanding its field-of-view. +* New :meth:`.Image.getAffine` method, for retrieving an affine between any of + the voxel, FSL, or world coordinate systems. +* New :mod:`fsl.transforms` package, which contains classes and functions for + working with linear and non-linear FLIRT and FNIRT transformations. +* New static methods :meth:`.Nifti.determineShape`, + :meth:`.Nifti.determineAffine`, :meth:`.Nifti.generateAffines`, and + :meth:`.Nifti.identifyAffine`. +* New prototype :mod:`fsl.transforms.x5` module, for reading/writing linear + and non-linear X5 files (*preliminary release, subject to change*). +* New prototype :mod:`.fsl_convert_x5` :mod:`.fsl_apply_x5` programs, for + working with X5 transformations (*preliminary release, subject to change*). + Changed @@ -20,6 +32,16 @@ Changed * The :mod:`.resample_image` script has been updated to support resampling of images with more than 3 dimensions. +* `h5py <https://www.h5py.org/>`_ has been added to the ``fslpy`` dependencies. + + +Deprecated +^^^^^^^^^^ + + +* The :mod:`fsl.utils.transform` module has been deprecated its functions can + now be found in the :mod:`fsl.transforms.affine` and + :mod:`fsl.transform.flirt` modules. 2.3.1 (Friday July 5th 2019) diff --git a/README.rst b/README.rst index ac2f6b895b93c2ab54cd6db2ec719754e7200bfe..6b0f069bb8212acae7a37cab9ba5dc18b0ba4ca7 100644 --- a/README.rst +++ b/README.rst @@ -91,6 +91,10 @@ The ``rtree`` library assumes that ``libspatialindex`` is installed on your system. +The :mod:`fsl.transform.x5` module uses `h5py <https://www.h5py.org/>`_, +which requires ``libhdf5``. + + Documentation -------------