Commits · 60f6e1547dbb95ab4b060e102f1cc51cabc332f9 · Michiel Cottaar / fslpy

23 Feb, 2021 2 commits
- MNT: Numpy deprecation warnings · a0862c6c
  Paul McCarthy authored Feb 23, 2021
  
  a0862c6c
- BF: Handle de-generate case of a surface which contains a single triangle · a473baa7
  Paul McCarthy authored Feb 23, 2021
  
  a473baa7
19 Feb, 2021 1 commit
- MNT: Silence numpy deprecation warnings · 48b09f65
  Paul McCarthy authored Feb 19, 2021
  
  48b09f65
17 Feb, 2021 1 commit
- MNT: Prevent errors at GC (Image), and when files are removed before · ea4f821b
  Paul McCarthy authored Feb 17, 2021
```
atexit (settings)
```
  ea4f821b
08 Feb, 2021 2 commits
- RF: Don't round voxel coords - COG coordinates are not integer · 947b7693
  Paul McCarthy authored Feb 08, 2021
  
  947b7693
- BF: Typo - copemax was being overridden with first voxel coordinate · d0be230e
  Paul McCarthy authored Feb 08, 2021
  
  d0be230e
29 Jan, 2021 2 commits
- DOC: Address sphinx warnings · 82997da0
  Paul McCarthy authored Jan 29, 2021
  
  82997da0
- RF: SeriesDescription may not be present in dmc2niix json output · 015c0dce
  Paul McCarthy authored Jan 29, 2021
  
  015c0dce
21 Jan, 2021 2 commits
- RF: minor formatting · d316b293
  Paul McCarthy authored Jan 21, 2021
  
  d316b293
- ENH: add function to load settings from arbitrary fsf · 673a206d
  Evan Edmond authored Jan 21, 2021
  
  673a206d
21 Jul, 2020 1 commit
- ENH: New replacement Text2Vest2Text scripts · 767a4780
  Paul McCarthy authored Jul 21, 2020
  
  767a4780
20 Jul, 2020 2 commits
- ENH: Workings on some new vest functions to be used by Text2Vest/Vest2Text · e48b6ac2
  Paul McCarthy authored Jul 20, 2020
  
  e48b6ac2
- RF: fixExt can pass arguments through to addExt · 54507efa
  Paul McCarthy authored Jul 20, 2020
  
  54507efa
23 Jun, 2020 1 commit
- DOC: fixes · 114bf373
  Paul McCarthy authored Jun 23, 2020
  
  114bf373
18 May, 2020 2 commits
- RF: Better support for nifti1/2 + FSLOUTPUTTYPE · f2ce0ed9
  Paul McCarthy authored May 18, 2020
  
  f2ce0ed9
- ENH: New Nifti.niftiDataType property · a33a8492
  Paul McCarthy authored May 18, 2020
  
  a33a8492
01 May, 2020 5 commits
- BUG: add tests for extracting images/surface data · 4cd6c30b
  Michiel Cottaar authored May 01, 2020
  
  4cd6c30b
- BUG: test IO for CIFTI · bca18bf7
  Michiel Cottaar authored May 01, 2020
  
  bca18bf7
- TEST: added tests for reading NIFTI and GIFTI · 6910c699
  Michiel Cottaar authored May 01, 2020
```
also added more support for loading basenames without extensions
```
  6910c699
- BUG: set undefined axes to None · db21c20b
  Michiel Cottaar authored May 01, 2020
  
  db21c20b
- ENH: Initial proposal for CIFTI support · c95dacf1
  Michiel Cottaar authored Apr 16, 2020
  
  c95dacf1
14 Apr, 2020 2 commits
- RF: isMelodicDir no longer requires dir to end in .ica, and no longer accepts · 0e98316b
  Paul McCarthy authored Apr 14, 2020
```
a file or sub-dir
```
  0e98316b
- MNT: more detailed error message · 34084a75
  Paul McCarthy authored Apr 14, 2020
  
  34084a75
29 Mar, 2020 1 commit
- BF: Image creation does not fail if a sidecar file with invalid JSON is · e7341f65
  Paul McCarthy authored Mar 29, 2020
```
present
```
  e7341f65
28 Mar, 2020 1 commit
- MNT: Aah. Remove all the deprecated things. · 630b9e1a
  Paul McCarthy authored Mar 28, 2020
  
  630b9e1a
27 Mar, 2020 1 commit
- RF: Allow passing log=None · 2fce4822
  Paul McCarthy authored Mar 26, 2020
  
  2fce4822
18 Mar, 2020 1 commit
- RF,ENH: Rewrite gifti.relatedFiles to support BIDS-style naming conventions · 8bbff876
  Paul McCarthy authored Mar 18, 2020
  
  8bbff876
16 Mar, 2020 1 commit
- RF: Allow .gii surfaces, but don't try to auto-load them · 581400f2
  Paul McCarthy authored Mar 16, 2020
  
  581400f2
28 Feb, 2020 2 commits
- BF: Image can no longer clear headerref · c47b9269
  Paul McCarthy authored Feb 28, 2020
  
  c47b9269
- RF,BF: Nifti.header is now protected via property setter - Failure in · 6abd4abf
  Paul McCarthy authored Feb 28, 2020
```
Image.save was resulting in a Nifti without a header.
```
  6abd4abf
04 Feb, 2020 1 commit
- BF: only load bids metadata if image is in bids dir, *and* has a bids filename. · f5f631e2
  Paul McCarthy authored Feb 04, 2020
  
  f5f631e2
28 Jan, 2020 2 commits
- BF: MGH imagesmay have zooms which don't match their vox2ras affine - make · a127f656
  Paul McCarthy authored Jan 28, 2020
```
sure the MGHImage class preserves this.
```
  a127f656
- ENH: New voxToSurfMat, for generating a freesurfer affine for any image. · 25865a2a
  Paul McCarthy authored Jan 28, 2020
  
  25865a2a
27 Jan, 2020 1 commit
- DOC: note on save method · cfe52385
  Paul McCarthy authored Jan 27, 2020
  
  cfe52385
25 Jan, 2020 1 commit
- BF: Force mesh indices to be integers. Remove unnecessary Mesh.__new__. · ebd14e27
  Paul McCarthy authored Jan 25, 2020
  
  ebd14e27
12 Dec, 2019 5 commits
- DOC: clarification · da579bd8
  Paul McCarthy authored Dec 12, 2019
  
  da579bd8
- RF: Adjust Image.save workflow to ensure image data is synced · a040a24f
  Paul McCarthy authored Dec 12, 2019
  
  a040a24f
- RF: Don't use get_data · d8231fe2
  Paul McCarthy authored Dec 12, 2019
  
  d8231fe2
- RF: Don't use nibabel get_data method · a95870fe
  Paul McCarthy authored Dec 12, 2019
  
  a95870fe
- RF: ImageWrapper maintains its own internal data cache, rather than relying on · 6f9ecfa5
  Paul McCarthy authored Dec 12, 2019
```
nibabel
```
  6f9ecfa5