Commits · 8aeb0555fac5e682b02c426a7f633362eac8f6f5 · Michiel Cottaar / fslpy

23 Jul, 2019 12 commits
- MNT: convert script entry point · 8aeb0555
  Paul McCarthy authored Apr 10, 2019
  
  8aeb0555
- ENH: Prototype X5 io module and x5<->flirt converter program. · 599a5de4
  Paul McCarthy authored Apr 09, 2019
  
  599a5de4
- RF: Include identity transforms in image affines. Basic flirt matrix · 30a248dc
  Paul McCarthy authored Apr 09, 2019
```
read/write routines
```
  30a248dc
- RF/ENH: transforms module is now a package, with affine, flirt sub-modules · dbaa3029
  Paul McCarthy authored Apr 09, 2019
  
  dbaa3029
- TEST: Unit tests for new Image staticmethods · f9e882b9
  Paul McCarthy authored Apr 09, 2019
  
  f9e882b9
- RF: Changed shape.affine generation methods to be staticmethods, as they may · 9924ee86
  Paul McCarthy authored Apr 09, 2019
```
be useful outside of the Nifti class (for testing, at least)
```
  9924ee86
- RF,ENH: Refactor Nifti class - it now pre-calculates affines between voxel, · 0b1b35bb
  Paul McCarthy authored Apr 09, 2019
```
fsl, and world coordinate systems. New getAffine method allows you to get an
affine between any of the coordinate systems
```
  0b1b35bb
- Merge branch 'enh/roi' into 'master' · 46d1a79f
  Paul McCarthy authored Jul 23, 2019
```
Enh/roi

See merge request fsl/fslpy!143
```
  46d1a79f
- DOC: Changelog · 7bd56aa5
  Paul McCarthy authored Jul 23, 2019
  
  7bd56aa5
- DOC: Doc for roi module · 12489115
  Paul McCarthy authored Jul 23, 2019
  
  12489115
- TEST: Test roi module · 48b29723
  Paul McCarthy authored Jul 23, 2019
  
  48b29723
- ENH: New image.roi module for extracting image ROI/expanding FOV · b3a82c7b
  Paul McCarthy authored Jul 23, 2019
  
  b3a82c7b
17 Jul, 2019 2 commits
- Merge branch 'rf/resample_image' into 'master' · e52fc826
  Paul McCarthy authored Jul 17, 2019
```
Rf/resample image

See merge request fsl/fslpy!142
```
  e52fc826
- DOC: Changelog · 9e8ecb14
  Paul McCarthy authored Jul 17, 2019
  
  9e8ecb14
16 Jul, 2019 6 commits
- TEST: More tests for resample_image script · d4830e7f
  Paul McCarthy authored Jul 16, 2019
  
  d4830e7f
- RF: Adjust matrix correctly (again) for >3D images. Adjust pixdims of higher · 84bd4950
  Paul McCarthy authored Jul 16, 2019
```
dimensions
```
  84bd4950
- TEST: Test resampleToReference with mismatched dimensions · 7d2a83e6
  Paul McCarthy authored Jul 16, 2019
  
  7d2a83e6
- RF: Warn when reference and image are both >3D · aec049f1
  Paul McCarthy authored Jul 16, 2019
  
  aec049f1
- BF: Fix resampling matrix for higher dimensions · 31c3b7af
  Paul McCarthy authored Jul 16, 2019
  
  31c3b7af
- ENH: Support resampling images with more than 3 dimensions · 92466953
  Paul McCarthy authored Jul 16, 2019
  
  92466953
05 Jul, 2019 2 commits
- Merge branch 'test/idle' into 'master' · 434b82f6
  Paul McCarthy authored Jul 05, 2019
```
TEST: Fix to idle test

See merge request fsl/fslpy!140
```
  434b82f6
- TEST: Fix to idle test · 8ed6d78e
  Paul McCarthy authored Jul 05, 2019
  
  8ed6d78e
04 Jul, 2019 4 commits
- Merge branch 'bf/single_channel_bitmap' into 'master' · fb2c2cc6
  Paul McCarthy authored Jul 04, 2019
```
Bf/single channel bitmap

See merge request fsl/fslpy!138
```
  fb2c2cc6
- DOC: Changelog · e7455ff0
  Paul McCarthy authored Jul 04, 2019
  
  e7455ff0
- TEST: Test palette images · c8470d44
  Paul McCarthy authored Jul 04, 2019
  
  c8470d44
- BF: Support palette images · f0a7333b
  Paul McCarthy authored Jul 04, 2019
  
  f0a7333b
03 Jul, 2019 3 commits
- RF: Newly created images are only considered "saved" if they were created from · cd79e13e
  Paul McCarthy authored Jul 03, 2019
```
a file name. Bitmap.asImage passes dataSource through to Image.__init__
```
  cd79e13e
- TEST: Test different numbers of channels · ef3113d2
  Paul McCarthy authored Jul 03, 2019
  
  ef3113d2
- BF: Tell Pillow to allow bigger images. Make sure single-chanel images · 1a811c11
  Paul McCarthy authored Jul 03, 2019
```
are still shaped (w, h, c), where c == 1
```
  1a811c11
25 Jun, 2019 10 commits
- Merge branch 'mnt/readme' into 'master' · 9427bb47
  Paul McCarthy authored Jun 25, 2019
```
Mnt/readme

See merge request fsl/fslpy!137
```
  9427bb47
- CI: Twine has a check feature · 0a678beb
  Paul McCarthy authored Jun 25, 2019
  
  0a678beb
- MNT: I hate pypi. It now rejects packages with minor typos in the description · 88a36bf8
  Paul McCarthy authored Jun 25, 2019
  
  88a36bf8
- Merge branch 'doc/readme' into 'master' · ce0ae4e8
  Paul McCarthy authored Jun 25, 2019
```
DOC: Fix typo in readme

See merge request fsl/fslpy!134
```
  ce0ae4e8
- DOC: Fix typo in readme · a2b07867
  Paul McCarthy authored Jun 25, 2019
  
  a2b07867
- Merge branch 'bf/mesh' into 'master' · f5ce5503
  Paul McCarthy authored Jun 25, 2019
```
Bf/mesh

See merge request fsl/fslpy!132
```
  f5ce5503
- TEST: Regression test · e4d972ac
  Paul McCarthy authored Jun 25, 2019
  
  e4d972ac
- DOC: Changelog · 86e7056c
  Paul McCarthy authored Jun 25, 2019
  
  86e7056c
- BF: Mesh class was using old face normals for newly added vertex sets · 511b7919
  Paul McCarthy authored Jun 25, 2019
  
  511b7919
- TEST: Relax idle block test · f520818d
  Paul McCarthy authored Jun 25, 2019
  
  f520818d
24 Jun, 2019 1 commit
- Merge branch 'enh/bitmap' into 'master' · 99eb7f2b
  Paul McCarthy authored Jun 24, 2019
```
Enh/bitmap

See merge request fsl/fslpy!130
```
  99eb7f2b