Commits · master · Michiel Cottaar / fslpy

28 Dec, 2021 3 commits
- Merge branch 'doc/changelog' into 'master' · d82553da
  Paul McCarthy authored Dec 28, 2021
```
DOC: changelog

See merge request fsl/fslpy!322
```
  d82553da
- DOC: changelog · 272a6980
  Paul McCarthy authored Dec 28, 2021
  
  272a6980
- Merge branch 'mel-wrap' into 'master' · d6c13e2f
  Paul McCarthy authored Dec 28, 2021
```
BUG: remove melodic wrapper assertion that input is nifti

Closes #377

See merge request fsl/fslpy!321
```
  d6c13e2f
27 Dec, 2021 1 commit
- remove assertion · e77234c5
  Evan Edmond authored Dec 27, 2021
  
  e77234c5
22 Dec, 2021 4 commits
- Merge branch 'mnt/version' into 'master' · 8064188c
  Paul McCarthy authored Dec 22, 2021
```
MNT: pre-minor-release version bump

See merge request fsl/fslpy!319
```
  8064188c
- MNT: pre-minor-release version bump · 86996810
  Paul McCarthy authored Dec 22, 2021
  
  86996810
- Merge branch 'doc/changelog' into 'master' · 4eb5149d
  Paul McCarthy authored Dec 22, 2021
```
DOC: changelog

See merge request fsl/fslpy!318
```
  4eb5149d
- DOC: changelog · 2c680368
  Paul McCarthy authored Dec 22, 2021
  
  2c680368
06 Dec, 2021 2 commits
- Merge branch 'mnt/doc' into 'master' · db6a8858
  Paul McCarthy authored Dec 06, 2021
```
DOC: Fix custom css code - the previous approach seems to have caused

See merge request fsl/fslpy!317
```
  db6a8858
- DOC: Fix custom css code - the previous approach seems to have caused · 8aa74e2b
  Paul McCarthy authored Dec 06, 2021
```
something to break in a recent sphinx / sphinx-rtd-theme version [skip-ci]
```
  8aa74e2b
30 Nov, 2021 5 commits
- Merge branch 'mnt/jpeg2000' into 'master' · 2e519abc
  Paul McCarthy authored Nov 30, 2021
```
MNT: Rudimentary support for JPEG 2000.

See merge request fsl/fslpy!316
```
  2e519abc
- DOC: changelog · decb9bec
  Paul McCarthy authored Nov 30, 2021
  
  decb9bec
- MNT: Rudimentary support for JPEG 2000. Would be better to automatically infer · 11c558b4
  Paul McCarthy authored Nov 30, 2021
```
type
```
  11c558b4
- Merge branch 'master' into 'master' · 8d1f3fa3
  Paul McCarthy authored Nov 30, 2021
```
ENH: wrapper for `fslorient` tool

See merge request fsl/fslpy!315
```
  8d1f3fa3
- ENH: wrapper for `fslorient` tool · 91bb5c27
  Evan Edmond authored Nov 30, 2021 and Paul McCarthy committed Nov 30, 2021
  
  91bb5c27
12 Nov, 2021 7 commits
- Merge branch 'bf/wrapper-tempfile' into 'master' · 4ef642f3
  Paul McCarthy authored Nov 12, 2021
```
Bf/wrapper tempfile

See merge request fsl/fslpy!313
```
  4ef642f3
- CI: Disable testing against 3.10 until deps are stable · 03e8261d
  Paul McCarthy authored Nov 12, 2021
  
  03e8261d
- RF: Make sure that input images don't get associated with temp files · a6b40f98
  Paul McCarthy authored Nov 12, 2021
  
  a6b40f98
- RF: Check that mapped nifti file exists, save to new temp file if not. · 343ec864
  Paul McCarthy authored Nov 12, 2021
  
  343ec864
- DOC: changelog · 019f8d81
  Paul McCarthy authored Nov 12, 2021
  
  019f8d81
- BF: Input files for wrapper functions were not being deleted · 5bbde65b
  Paul McCarthy authored Nov 12, 2021
  
  5bbde65b
- TEST: Test that all temp files creatd by wrapper functions are deleted · 1699706b
  Paul McCarthy authored Nov 12, 2021
  
  1699706b
27 Oct, 2021 6 commits
- Merge branch 'rf/strict-json' into 'master' · a55a39e0
  Paul McCarthy authored Oct 27, 2021
```
Rf/strict json

See merge request fsl/fslpy!312
```
  a55a39e0
- TEST: Unit tests for json metadata with ctrl chars · 8aa30d0e
  Paul McCarthy authored Oct 27, 2021
  
  8aa30d0e
- DOC: readme · afb2f31d
  Paul McCarthy authored Oct 27, 2021
  
  afb2f31d
- DOC: Changelog · d4f439dd
  Paul McCarthy authored Oct 27, 2021
  
  d4f439dd
- CI: Test against py310 · 063e289c
  Paul McCarthy authored Oct 27, 2021
  
  063e289c
- RF: Accept non-printable characters in JSON · a4b45be2
  Paul McCarthy authored Oct 27, 2021
  
  a4b45be2
20 Aug, 2021 12 commits
- Merge branch 'rf/imglob-perf' into 'master' · 48984e01
  Paul McCarthy authored Aug 20, 2021
```
MNT: Improve performance of im* scripts

See merge request fsl/fslpy!310
```
  48984e01
- MNT: version · 418c0b69
  Paul McCarthy authored Aug 20, 2021
  
  418c0b69
- DOC: changelog · 7005015a
  Paul McCarthy authored Aug 20, 2021
  
  7005015a
- MNT: Apply same minor optimisations to other im* scripts - avoid expensive imports · c3245f02
  Paul McCarthy authored Aug 20, 2021
  
  c3245f02
- TEST: pass wildcard to imglob · d652c88e
  Paul McCarthy authored Aug 20, 2021
  
  d652c88e
- MNT: Improve imglob performance by avoiding expensive imports (numpy/nibabel/etc) · 8c69d1bb
  Paul McCarthy authored Aug 20, 2021
  
  8c69d1bb
- RF: Expand wildcard patterns if they are passed to imglob, instead of being · 2306f558
  Paul McCarthy authored Aug 20, 2021
```
expanded by the shell.
```
  2306f558
- RF: Only import wx on access, not when Platform obj is created · af99f14e
  Paul McCarthy authored Aug 20, 2021
  
  af99f14e
- Merge branch 'rf/fslsub' into 'master' · f3d34686
  Paul McCarthy authored Aug 20, 2021
```
Add fsl.wrappers.fsl_sub, deprecate fsl.utils.fslsub.submit

Closes #376 and #373

See merge request fsl/fslpy!309
```
  f3d34686
- TEST: Adjust unit tests r.e. fslsub/run changes · d53aae7c
  Paul McCarthy authored Aug 20, 2021
  
  d53aae7c
- DOC: changelog · 46dd22ee
  Paul McCarthy authored Aug 20, 2021
  
  46dd22ee
- RF: Change default behaviour of run function so that stdout/stderr are · a446c324
  Paul McCarthy authored Aug 20, 2021
```
forwarded to parent process in addition to being captured and returned (#373)
```
  a446c324