Commits · 42b3873559ad294ce9ec901ed7a7e7fa2ff2eb8c · Michiel Cottaar / gyral_structure · GitLab

03 May, 2020 15 commits
- BUG: fix extent of param_evaluator and run on smaller npos · 42b38735
  Michiel Cottaar authored May 03, 2020
  
  42b38735
- BUG: fix radius of vertices · cdccc8b9
  Michiel Cottaar authored May 03, 2020
  
  cdccc8b9
- ENH: don't allow deep white matter to be filled by binary_fill_holes · 22d041f9
  Michiel Cottaar authored May 03, 2020
  
  22d041f9
- BUG: be more strict about maximum extent supported by precomputed grid · 5602eb29
  Michiel Cottaar authored May 03, 2020
  
  5602eb29
- BUG: make sure all inputs have type i4 · da63ca66
  Michiel Cottaar authored May 03, 2020
  
  da63ca66
- ENH: more efficiently compute idx_centroid for precomputed grid · 7f1c7ed2
  Michiel Cottaar authored May 03, 2020
  
  7f1c7ed2
- REF: removed unused import · 2407d7c4
  Michiel Cottaar authored May 03, 2020
  
  2407d7c4
- BUG: don't del bakward_idx if only_forward is set · 1f43161c
  Michiel Cottaar authored May 03, 2020
  
  1f43161c
- BUG: don't uncompress and recompress orientations · 2b5e6a04
  Michiel Cottaar authored May 03, 2020
  
  2b5e6a04
- OPT: avoid argsort by only storing forward indices during tractography · 0deac625
  Michiel Cottaar authored May 03, 2020
  
  0deac625
- OPT: more minor speedup · 8a8e5e3c
  Michiel Cottaar authored May 03, 2020
  
  8a8e5e3c
- BUG: always return MultEvaluator when requesting evaluator · 3be1558e
  Michiel Cottaar authored May 03, 2020
  
  3be1558e
- BUG: several bug fixes · 35e90a44
  Michiel Cottaar authored May 03, 2020
  
  35e90a44
- OPT: don't recompile cuda code for every tractography step · 7661c6b7
  Michiel Cottaar authored May 03, 2020
```
Achieved by calling update_pos to update the positions
in the GPU arrays (as well as updating the indices in the
forward and backwards arrays)
```
  7661c6b7
- DOC: update tutorial · 9b606f3b
  Michiel Cottaar authored May 02, 2020
  
  9b606f3b
19 Apr, 2020 3 commits
- BUG: fixed application of surface mask · 2aa5e6ae
  Michiel Cottaar authored Apr 19, 2020
  
  2aa5e6ae
- RF: stronger radiality constraint · 14a1afa0
  Michiel Cottaar authored Apr 19, 2020
  
  14a1afa0
- RF: split gs_dyad in gs_dyad_surf and gs_dyad_vol · 3a64ff2a
  Michiel Cottaar authored Apr 19, 2020
  
  3a64ff2a
03 Apr, 2020 1 commit
- BUG: allow error in optimisation, if number of iterations is large enough · 608bfc11
  Michiel Cottaar authored Apr 03, 2020
  
  608bfc11
31 Mar, 2020 1 commit
- BUG: surface charges should be negative · 3711b1cf
  Michiel Cottaar authored Mar 31, 2020
  
  3711b1cf
26 Mar, 2020 1 commit
- ENH: optionally only produce non-plot QC outputs · afe125ea
  Michiel Cottaar authored Mar 26, 2020
  
  afe125ea
07 Jan, 2020 2 commits
- disable smoothness by default · c15907c1
  Michiel Cottaar authored Dec 12, 2019
  
  c15907c1
- ENH: bring back option to have uniform density at surface · c795e05f
  Michiel Cottaar authored Jan 07, 2020
  
  c795e05f
12 Dec, 2019 1 commit
- BUG: fix gs_qc to work with N(streamlines)/mm^3 · 1ae45c43
  Michiel Cottaar authored Dec 12, 2019
  
  1ae45c43
19 Nov, 2019 1 commit
- BUG: don't divide target density by vertex area twice · 0e660263
  Michiel Cottaar authored Nov 19, 2019
  
  0e660263
18 Nov, 2019 1 commit
- BUG: give target density in # of streamlines to streamline density · f92f6af2
  Michiel Cottaar authored Nov 18, 2019
  
  f92f6af2
13 Nov, 2019 5 commits
- BUG: __truediv__ instead of __div__ · 20e6797e
  Michiel Cottaar authored Nov 13, 2019
  
  20e6797e
- ENH: allow division of cost function by number · 6eb31cf4
  Michiel Cottaar authored Nov 13, 2019
  
  6eb31cf4
- BUG: typo · 99f39b77
  Michiel Cottaar authored Nov 13, 2019
  
  99f39b77
- BUG: adjust weights to take into account average cost function is now used · 26908950
  Michiel Cottaar authored Nov 13, 2019
  
  26908950
- ENH: weight average rather than total cost function · 949474e2
  Michiel Cottaar authored Nov 13, 2019
  
  949474e2
12 Nov, 2019 1 commit
- ENH: add smoothness constraint to gs_fit · 40d893ec
  Michiel Cottaar authored Nov 12, 2019
  
  40d893ec
04 Nov, 2019 1 commit
- BUG: default target density is now per cortical volume element · c85344cf
  Michiel Cottaar authored Nov 04, 2019
  
  c85344cf
16 Sep, 2019 1 commit
- DOC: include links to code · 34bd3486
  Michiel Cottaar authored Sep 16, 2019
  
  34bd3486
23 Aug, 2019 4 commits
- BUG: add numexpr to required installs · a6737ebf
  Michiel Cottaar authored Aug 23, 2019
  
  a6737ebf
- OPT: use numexpr to evaluate sympy functions more quickly · 151074a5
  Michiel Cottaar authored Aug 23, 2019
  
  151074a5
- BUG: optionally ignore undefined voxels · ea143e7c
  Michiel Cottaar authored Aug 23, 2019
  
  ea143e7c
- ENH: also compute radiality in gs_dyad · 9bbf6e47
  Michiel Cottaar authored Aug 23, 2019
  
  9bbf6e47
22 Aug, 2019 2 commits
- DOC: typo · 5b1ba3e7
  Michiel Cottaar authored Aug 22, 2019
  
  5b1ba3e7
- BUG: convert array to vertices before storing in dscalar · 9ec24b1b
  Michiel Cottaar authored Aug 22, 2019
  
  9ec24b1b