Commits · master · Michiel Cottaar / gyral_structure

06 Mar, 2021 2 commits
- fix typo · c240139e
  Michiel Cottaar authored Mar 06, 2021
  
  c240139e
- add docker tags · 87aa0461
  Michiel Cottaar authored Mar 06, 2021
  
  87aa0461
05 Mar, 2021 1 commit
- Replace mcutils with mcot · 03af5f3f
  Michiel Cottaar authored Mar 05, 2021
  
  03af5f3f
05 May, 2020 2 commits
- ENH: add warning if out of range · fed6ea08
  Michiel Cottaar authored May 05, 2020
  
  fed6ea08
- BUG: _full_pos no longer needed · eb0e7369
  Michiel Cottaar authored May 05, 2020
  
  eb0e7369
04 May, 2020 7 commits
- DOC: replace native with 32k surfaces · 3719ff65
  Michiel Cottaar authored May 04, 2020
  
  3719ff65
- BUG: don't compute minimum of binarised mask · 3bfdf4f6
  Michiel Cottaar authored May 04, 2020
  
  3bfdf4f6
- BUG: ensure indices are large enough · 2dd5d785
  Michiel Cottaar authored May 04, 2020
  
  2dd5d785
- BUG: typo · fb4d6109
  Michiel Cottaar authored May 04, 2020
  
  fb4d6109
- BUG: remove python 3.5 dependency · 31b5e756
  Michiel Cottaar authored May 04, 2020
  
  31b5e756
- BUG: return different function if sparse multiplication is empty · dffd0db9
  Michiel Cottaar authored May 04, 2020
  
  dffd0db9
- OPT: delete hidden request after use · 061c0d6e
  Michiel Cottaar authored May 04, 2020
  
  061c0d6e
03 May, 2020 19 commits
- BUG: may fixes · dafddcfe
  Michiel Cottaar authored May 03, 2020
  
  dafddcfe
- BUG: correctly extract radial results from MultEvaluator · cf9b8764
  Michiel Cottaar authored May 03, 2020
  
  cf9b8764
- BUG: pass on `nsim` to other param_evaluator · 89d3828a
  Michiel Cottaar authored May 03, 2020
  
  89d3828a
- BUG: test new triangle code · 75ddb658
  Michiel Cottaar authored May 03, 2020
  
  75ddb658
- BUG: fix extent of param_evaluator and run on smaller npos · 42b38735
  Michiel Cottaar authored May 03, 2020
  
  42b38735
- BUG: fix radius of vertices · cdccc8b9
  Michiel Cottaar authored May 03, 2020
  
  cdccc8b9
- ENH: don't allow deep white matter to be filled by binary_fill_holes · 22d041f9
  Michiel Cottaar authored May 03, 2020
  
  22d041f9
- BUG: be more strict about maximum extent supported by precomputed grid · 5602eb29
  Michiel Cottaar authored May 03, 2020
  
  5602eb29
- BUG: make sure all inputs have type i4 · da63ca66
  Michiel Cottaar authored May 03, 2020
  
  da63ca66
- ENH: more efficiently compute idx_centroid for precomputed grid · 7f1c7ed2
  Michiel Cottaar authored May 03, 2020
  
  7f1c7ed2
- REF: removed unused import · 2407d7c4
  Michiel Cottaar authored May 03, 2020
  
  2407d7c4
- BUG: don't del bakward_idx if only_forward is set · 1f43161c
  Michiel Cottaar authored May 03, 2020
  
  1f43161c
- BUG: don't uncompress and recompress orientations · 2b5e6a04
  Michiel Cottaar authored May 03, 2020
  
  2b5e6a04
- OPT: avoid argsort by only storing forward indices during tractography · 0deac625
  Michiel Cottaar authored May 03, 2020
  
  0deac625
- OPT: more minor speedup · 8a8e5e3c
  Michiel Cottaar authored May 03, 2020
  
  8a8e5e3c
- BUG: always return MultEvaluator when requesting evaluator · 3be1558e
  Michiel Cottaar authored May 03, 2020
  
  3be1558e
- BUG: several bug fixes · 35e90a44
  Michiel Cottaar authored May 03, 2020
  
  35e90a44
- OPT: don't recompile cuda code for every tractography step · 7661c6b7
  Michiel Cottaar authored May 03, 2020
```
Achieved by calling update_pos to update the positions
in the GPU arrays (as well as updating the indices in the
forward and backwards arrays)
```
  7661c6b7
- DOC: update tutorial · 9b606f3b
  Michiel Cottaar authored May 02, 2020
  
  9b606f3b
19 Apr, 2020 3 commits
- BUG: fixed application of surface mask · 2aa5e6ae
  Michiel Cottaar authored Apr 19, 2020
  
  2aa5e6ae
- RF: stronger radiality constraint · 14a1afa0
  Michiel Cottaar authored Apr 19, 2020
  
  14a1afa0
- RF: split gs_dyad in gs_dyad_surf and gs_dyad_vol · 3a64ff2a
  Michiel Cottaar authored Apr 19, 2020
  
  3a64ff2a
03 Apr, 2020 1 commit
- BUG: allow error in optimisation, if number of iterations is large enough · 608bfc11
  Michiel Cottaar authored Apr 03, 2020
  
  608bfc11
31 Mar, 2020 1 commit
- BUG: surface charges should be negative · 3711b1cf
  Michiel Cottaar authored Mar 31, 2020
  
  3711b1cf
26 Mar, 2020 1 commit
- ENH: optionally only produce non-plot QC outputs · afe125ea
  Michiel Cottaar authored Mar 26, 2020
  
  afe125ea
07 Jan, 2020 2 commits
- disable smoothness by default · c15907c1
  Michiel Cottaar authored Dec 12, 2019
  
  c15907c1
- ENH: bring back option to have uniform density at surface · c795e05f
  Michiel Cottaar authored Jan 07, 2020
  
  c795e05f
12 Dec, 2019 1 commit
- BUG: fix gs_qc to work with N(streamlines)/mm^3 · 1ae45c43
  Michiel Cottaar authored Dec 12, 2019
  
  1ae45c43