From 247c2e29672d58ac3751e27db64a9d52d6862629 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Thu, 15 Feb 2018 11:55:17 +0000
Subject: [PATCH] Note in file management prac
---
getting_started/03_file_management.ipynb | 8 ++++++++
getting_started/03_file_management.md | 9 +++++++++
2 files changed, 17 insertions(+)
diff --git a/getting_started/03_file_management.ipynb b/getting_started/03_file_management.ipynb
index b9d93b6..3aa9736 100644
--- a/getting_started/03_file_management.ipynb
+++ b/getting_started/03_file_management.ipynb
@@ -805,6 +805,14 @@
" and `fnmatch.filter` functions to identify which paths match your pattern.\n",
"\n",
"\n",
+ "Note that the syntax used by `glob` and `fnmatch` is similar, but __not__\n",
+ "identical to the syntax that you are used to from `bash`. Refer to the\n",
+ "[`fnmatch` module](https://docs.python.org/3.5/library/fnmatch.html)\n",
+ "documentation for details. If you need more complicated pattern matching, you\n",
+ "can use regular expressions, available via the [`re`\n",
+ "module](https://docs.python.org/3.5/library/re.html).\n",
+ "\n",
+ "\n",
"For example, let's retrieve all images that are in our data set:"
]
},
diff --git a/getting_started/03_file_management.md b/getting_started/03_file_management.md
index 73527ca..614425b 100644
--- a/getting_started/03_file_management.md
+++ b/getting_started/03_file_management.md
@@ -615,8 +615,17 @@ pattern matching logic.
and `fnmatch.filter` functions to identify which paths match your pattern.
+Note that the syntax used by `glob` and `fnmatch` is similar, but __not__
+identical to the syntax that you are used to from `bash`. Refer to the
+[`fnmatch` module](https://docs.python.org/3.5/library/fnmatch.html)
+documentation for details. If you need more complicated pattern matching, you
+can use regular expressions, available via the [`re`
+module](https://docs.python.org/3.5/library/re.html).
+
+
For example, let's retrieve all images that are in our data set:
+
```
allimages = glob(op.join('raw_mri_data', '**', '*.nii*'), recursive=True)
print('All images in experiment:')
--
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