diff --git a/getting_started/08_scripts.md b/getting_started/08_scripts.md index 2f506ed70aab078b0ad7e9a4af3e7e29a9a59aa7..e88da22bd6878bcd219e07b687c90ce7a0f27e4e 100644 --- a/getting_started/08_scripts.md +++ b/getting_started/08_scripts.md @@ -93,7 +93,7 @@ fsldirpath = os.getenv('FSLDIR') commands = commands.format(t1 = 't1.nii.gz', t1_mask = 't1_mask', t2 = 't2', t2_masked = 't2_masked', fsldir = fsldirpath) sout=[] -for cmd in commands.split('\n'): +for cmd in commands.splitlines(): if cmd: # avoids empty strings getting passed to sp.run() print('Running command: ', cmd) spobj = sp.run(shlex.split(cmd), stdout = sp.PIPE)