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UK_biobank_pipeline
===================

The `UK_biobank_pipeline` project is a processing pipeline written mainly in Python and bash. It uses [FSL](http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/) as the basic building blocks.


Dependencies
------------

Most of the dependencies of `UK_biobank_pipeline` are listed in the [requirements.txt](requirements.txt) file.

One additional dependency - [gradunwarp](bb_python/python_installation/gradunwarp_FMRIB.tar.gz) - can be installed with a provided [installation script](bb_python/python_installation/install_bb_python.sh) 


Documentation
-------------

`UK_biobank_pipeline` is explained in detail in the paper [Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank](http://www.biorxiv.org/content/early/2017/04/24/130385).