Code for the analysis pipeline presented in the paper
> "Adapting the UK Biobank brain MRI imaging protocol and analysis pipeline for the C-MORE multi-organ study of COVID-19 survivors"
> "Adapting the UK Biobank brain imaging protocol and analysis pipeline for the C-MORE multi-organ study of COVID-19 survivors"
Used in the project:
> "Capturing MultiORgan Effects of COVID-19’ (C-MORE) study". Details of the main multiorgan study are described [here](https://www.thelancet.com/journals/eclinm/article/PIIS2589-5370(20)30427-2/fulltext)
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@@ -25,5 +25,5 @@ This sequence was closely matched to the one used in UKB.
Images were processed using the [UKB pipeline](https://git.fmrib.ox.ac.uk/falmagro/UK_biobank_pipeline_v_1) to extract T2* in 14 structures.
Additional IDPs extracted in this study are quantitative susceptibility mapping (QSM) values, referenced to the CSF QSM value, from 14 structures. See `QSM_pipeline` for details
***Arterial Spin Labelling (ASL).**
This sequence was not included in UKB so far. See `ASL_pipeline` for details on preprocessing pipeline and IDP extraction.
This sequence was not included in UKB at the time of this study. See `ASL_pipeline` for details on preprocessing pipeline and IDP extraction.
