Upload bb_IDP_asl.sh

bb_ASL/bb_IDP_asl.sh

+#!/bin/sh
+#
+# Script name: bb_asl_summary_measures
+#
+# Description: Script to generate the IDPs related to ASL
+#
+# Authors: Thomas Okell, Flora Kennedy McConnell, Ludovica Griffanti, Fidel Alfaro-Almagro
+#
+# Copyright 2021 University of Oxford
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+origDir=`pwd`
+#scriptName=`basename "$0"`
+scriptName="bb_IDP_ASL"
+direc=$1
+
+cd $direc
+
+#Setting the string of NaN in case there is a problem.
+result1="NaN"
+result2="NaN"
+result3="NaN"
+result4="NaN"
+result5="NaN"
+result6="NaN"
+result7="NaN"
+result8="NaN"
+
+if [ -f ASL/CBF_gm_mean.txt ] ; then
+    result1=`cat ASL/CBF_gm_mean.txt`
+fi
+
+if [ -f ASL/ATT_gm_mean.txt ] ; then
+    result2=`cat ASL/ATT_gm_mean.txt` 
+fi
+
+if [ -f ASL/CBF_wm_mean.txt ] ; then
+    result3=`cat ASL/CBF_wm_mean.txt` 
+fi
+
+if [ -f ASL/ATT_wm_mean.txt ] ; then
+    result4=`cat ASL/ATT_wm_mean.txt` 
+fi
+
+if [ -f ASL/CBF_pvcorr_gm_mean.txt ] ; then
+    result5=`cat ASL/CBF_pvcorr_gm_mean.txt` 
+fi
+
+if [ -f ASL/ATT_pvcorr_gm_mean.txt ] ; then
+    result6=`cat ASL/ATT_pvcorr_gm_mean.txt` 
+fi
+
+if [ -f ASL/CBF_pvcorr_wm_mean.txt ] ; then
+    result7=`cat ASL/CBF_pvcorr_wm_mean.txt` 
+fi
+
+if [ -f ASL/ATT_pvcorr_wm_mean.txt ] ; then
+    result8=`cat ASL/ATT_pvcorr_wm_mean.txt` 
+fi
+
+result="$result1 $result2 $result3 $result4 $result5 $result6 $result7 $result8"
+
+mkdir -p IDP_files
+
+echo $result > IDP_files/$scriptName.txt
+echo $result
+    
+cd $origDir
\ No newline at end of file