Commit 7e7e072e authored by Ludovica Griffanti's avatar Ludovica Griffanti
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Update README.md

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......@@ -22,8 +22,8 @@ Additional IDPs extracted in this study:
In this multiorgan protocol only 3 orthogonal diffusion directions were acquired. The [UKB pipeline](https://git.fmrib.ox.ac.uk/falmagro/UK_biobank_pipeline_v_1) was used for preprocessing, to derive mean diffusivity (MD). Average MD was then calculated within an average skeleton in standard space for each tract of the JHU atlas using the `bb_tbss_md` script (modified from bb_tbss of the UKB pipeline) and also within the normal appearing white matter only (i.e. outside WMH) using the `bb_tbss_md_NAWM` script.
* **Susceptibility-weighted MR Imaging (SWI).**
This sequence was closely matched to the one used in UKB.
Images were processed using the [UKB pipeline](https://git.fmrib.ox.ac.uk/falmagro/UK_biobank_pipeline_v_1) to extract T2* ini 14 structures.
Additional IDPs extracted in this study are quantitative susceptibility mapping (QSM), referenced to CSF, from 14 structures. See `QSM_pipeline` for details
Images were processed using the [UKB pipeline](https://git.fmrib.ox.ac.uk/falmagro/UK_biobank_pipeline_v_1) to extract T2* in 14 structures.
Additional IDPs extracted in this study are quantitative susceptibility mapping (QSM) values, referenced to the CSF QSM value, from 14 structures. See `QSM_pipeline` for details
* **Arterial Spin Labelling (ASL).**
This sequence was not included in UKB so far. See `ASL_pipeline` for details on preprocessing pipeline and IDP extraction.
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