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open-science
analysis
C-MORE brain MRI
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97ca8556
Commit
97ca8556
authored
May 08, 2021
by
Ludovica Griffanti
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Update README.md with visual check info
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# ASL analysis pipeline
Order of scripts:
1)
`bb_asl.sh`
: ASL preprocessing using oxasl with structural and distortion correction
2)
`bb_asl_summary_measures.sh`
: extracts summary CBF and ATT metrics in GM and WM
3)
`bb_IDP_asl.sh`
: Script to generate the IDPs related to ASL and save them in a similar format to the other UK Biobank IDPs
2)
`bb_asl_visual_check.sh`
: Script to visually inspect the output of the ASL processing pipeline
3)
`bb_asl_summary_measures.sh`
: extracts summary CBF and ATT metrics in GM and WM
4)
`bb_IDP_asl.sh`
: Script to generate the IDPs related to ASL and save them in a similar format to the other UK Biobank IDPs
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