Commit 98903553 authored by Ludovica Griffanti's avatar Ludovica Griffanti
Browse files

Update README.md adding cmore_segIntensity.sh

parent e877a2f9
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Main scripts:
1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF and warps masks from template space back to individuals' native spaces
2) `cmore_segSize.py`: calculates the volume of the masks in individuals' native spaces
3) `cmore_segIntensity.sh`: calculates the T2-FLAIR intensity (raw and normalised for WM) within the OB masks in individuals' native spaces
MMORF: https://git.fmrib.ox.ac.uk/flange/mmorf_beta
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