Commit aa6d68f8 authored by Christoph Arthofer's avatar Christoph Arthofer
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Update README.md

parent a5d76d52
# Olfactory bulb (OB) analysis pipeline
Main scripts:
1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF
2) `cmore_run_warpLabels2Ind.sh`: warps the OB labels back to the individuals
1) `cmore_run_reg2template.sh`: registers individual images to the template using MMORF and warps masks from template space back to individuals' native spaces
2) `cmore_segSize.py`: calculates the volume of the masks in individuals' native spaces
MMORF: https://git.fmrib.ox.ac.uk/flange/mmorf_beta
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