Commit d7747ec6 authored by Christoph Arthofer's avatar Christoph Arthofer
Browse files

Delete cmore_invertAffine.sh

parent ced5b36d
#!/bin/bash
#$ -cwd -j y
#$ -r y
echo `date`: Executing task ${SGE_TASK_ID} of job ${JOB_ID} on `hostname` as user ${USER}
echo SGE_TASK_FIRST=${SGE_TASK_FIRST}, SGE_TASK_LAST=${SGE_TASK_LAST}, SGE_TASK_STEPSIZE=${SGE_TASK_STEPSIZE}
. ~/.bash_profile
. $MODULESHOME/init/bash
module load fsl/6.0.3
ID_PATH=$1
AFF_PATH=$2
INV_AFF_PATH=$3
IMG_IN_ID=$(awk 'NR=='${SGE_TASK_ID} ${ID_PATH})
printf -v AFF_PATH ${AFF_PATH} ${IMG_IN_ID}
printf -v INV_AFF_PATH ${INV_AFF_PATH} ${IMG_IN_ID}
echo "convert_xfm -omat ${INV_AFF_PATH} -inverse ${AFF_PATH}"
convert_xfm -omat ${INV_AFF_PATH} -inverse ${AFF_PATH}
rv=$?
echo `date`: task complete
exit $rv
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