Open WIN Community issueshttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues2022-10-11T19:45:54+01:00https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/3add all-contributors bot2022-10-11T19:45:54+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukadd all-contributors bothttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/63Add information about zenodo as a data repository2023-07-04T08:58:41+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukAdd information about zenodo as a data repository## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report (eg. 404)
- [ ] documentation (eg. typos, broken links)
- [x] feature request (eg. add GitLab tutorial)
- [ ] question (eg. how does this work?...## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report (eg. 404)
- [ ] documentation (eg. typos, broken links)
- [x] feature request (eg. add GitLab tutorial)
- [ ] question (eg. how does this work?)
## Where is the issue?
https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/data/how/#zenodo
## What is the issue?
information incomplete
## How do we solve the issue?
Describe main features and benfits of zenodo. Link to thier guides as appropriate.
Benefits I can think of:
- "restricted access" deposits for reviewer only and senestive materials.
- Could link in the future to a "WIN zenodo community".
- doi versions
- Integration with GitLab CI (see [FSLeyes CI](https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/-/blob/master/.gitlab-ci.yml))
## Anything else?
> Please give any additional detail which may be relevant or useful, for example detailed explanation, motivation, stacktraces, related issues, links for us to have context.
---
## Fix the issue yourself?
If you are able to, you are welcome to submit new content directly via a merge request. This will ensure you are attributed for your suggestion. See this guide on submitting a merge request via GitLab: https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/gitlab/3-2-collaborating-fork-their-repo/https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/16add join link to win-open-data mailing list2021-07-16T11:06:58+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukadd join link to win-open-data mailing listSubmitted a request to create win-open-data@maillist.ox.ac.uk for external users to subscribe to updates (15/07/21).
> Logged: Support Call# 11111087 - List "win-open-data@maillist.ox.ac.uk" creation request from cassandra.gouldvanpraag...Submitted a request to create win-open-data@maillist.ox.ac.uk for external users to subscribe to updates (15/07/21).
> Logged: Support Call# 11111087 - List "win-open-data@maillist.ox.ac.uk" creation request from cassandra.gouldvanpraag@psych.ox.ac.uk
Also expect mailing list subscribe to be included in data availability statements for papers currently being prepared for submission.
When request has been approved update the following:
* [ ] link for joining
* [ ] add suggested data availability statement wordingCassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukCassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukhttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/45Add links to info about fslpy, data-tree and pipe-tree2022-06-18T09:36:22+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukAdd links to info about fslpy, data-tree and pipe-tree## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
Some very cool stuff exists on [https://open.win.ox.ac.uk/pages/fsl/fslpy/index.html]...## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
Some very cool stuff exists on [https://open.win.ox.ac.uk/pages/fsl/fslpy/index.html](https://open.win.ox.ac.uk/pages/fsl/fslpy/index.html). Could we link to that from the community pages, e.g. under [Open Analysis](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/analysis/)?
Also developments on data-tree and pipe-tree would be wonderful to share!
## What is the expected/preferred behaviour?
Submit a merge request to update the [Open Analysis](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/analysis/) page with some blurbs about (and links to):
1. fslpy and conda installation
2. data-tree
3. pipe-tree
## What is the motivation / use case for changing the behaviour?
Share these developments!
## Other information
> Please give any additional detail which may be relevant or useful, for example detailed explanation, stacktraces, related issues, links for us to have context.https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/26Add "neurodiversity" to participation guidelines2022-01-21T19:44:24+00:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukAdd "neurodiversity" to participation guidelinesThe [participation guidelines](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/community/CODE_OF_CONDUCT/#guiding-principles) do not explicitly mention neurodiversity. This should be added toothed list.The [participation guidelines](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/community/CODE_OF_CONDUCT/#guiding-principles) do not explicitly mention neurodiversity. This should be added toothed list.https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/12Aim and principles of the community2021-07-15T16:18:26+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukAim and principles of the communityhttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/55alternative to Atom text editor2023-07-04T08:54:55+01:00Bernd Taschleralternative to Atom text editor## What is the current behaviour?
The gitlab tutorials are recommending to use the Atom text editor. Unfortunately, Atom has recently been discontinued (see official [blog post](https://github.blog/2022-06-08-sunsetting-atom/)) and alth...## What is the current behaviour?
The gitlab tutorials are recommending to use the Atom text editor. Unfortunately, Atom has recently been discontinued (see official [blog post](https://github.blog/2022-06-08-sunsetting-atom/)) and although people can still use it, it is no longer maintained (i.e. no new security updates, package management stopped working, etc.).
## What is the expected/preferred behaviour?
We should find an alternative and update the community pages accordingly (especially the [Atom tutorial](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/gitlab/1-3-tools-atom/) page).
## Other information
A potential alternative is sublime text: https://www.sublimetext.com/
Other options: https://stackshare.io/atom/alternativesMiguel FarinhaMiguel Farinhahttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/13Are the personas and pathways representative?2021-07-15T16:18:38+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukAre the personas and pathways representative?https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/46Community feedback at guidance on pros and cons of sequences2022-07-06T10:52:44+01:00Verena SarrazinCommunity feedback at guidance on pros and cons of sequences
## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
> Please describe the problem you have encountered or the feature/content you would...
## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
> Please describe the problem you have encountered or the feature/content you would like to extend. Please include links to the affected page(s).
After presenting the MR protocol database to my lab, my colleagues suggested that we add a section to the documentation to ask researchers to describe the pros and cons of the sequences.
## What is the expected/preferred behaviour?
> Please describe how the problem could be fixed or what additional feature/content could be included.
> If you are able to, you are welcome to submit new content directly via a merge request. This will ensure you are attributed for your suggestion. See this guide on submitting a merge request via GitLab: https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/gitlab/3-2-collaborating-fork-their-repo/
We have added some new text (commit 3816bfcceb5da160f8edf61a258421d4e2d3f15f) to the documentation in the description section. It would be useful to get feedback from my lab to confirm this meets the requirement.https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/30Create issue templates2022-02-17T12:59:01+00:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukCreate issue templatesWe should have some nice issue templates for this project. Have a look through the sort of issues we are creating already and create some templates using [this guide](https://docs.gitlab.com/ee/user/project/description_templates.html)
-...We should have some nice issue templates for this project. Have a look through the sort of issues we are creating already and create some templates using [this guide](https://docs.gitlab.com/ee/user/project/description_templates.html)
- [x] Range of templates defined - one "default" issue felt more manageable for users
- [x] Templates created - see .gitlab/issue_templates/default.mdhttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/8Creating an open-science news tab2021-08-18T11:13:56+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukCreating an open-science news tabhttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/15[documentation] Add info about open source licensing of software2021-09-29T10:22:47+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] Add info about open source licensing of softwareThe official line on open source licensing your software is here: https://researchsupport.admin.ox.ac.uk/reporting/openaccess#collapse393821
I’ve spoken with OUI about this recently, and they say that in practical terms if you think you...The official line on open source licensing your software is here: https://researchsupport.admin.ox.ac.uk/reporting/openaccess#collapse393821
I’ve spoken with OUI about this recently, and they say that in practical terms if you think your code might have commercial value then you should get approval from your HoD. I’d like to get in place some blanket approval from WIN HoDs which means we don’t have to go to them for approval in every instance, especially if it's lilt chances of code for analysis cf. whole software packages.
The “safest” option (in terms of protecting University IP) would be to use a CC-BY-NC-SA-2.0, so it cannot be used for commercial purposes, with a “share alike” to stop anyone else passing it on for commercial use. You could add a note at the top of the license requesting that anyone interested in commercial use should contact you.
For the Copyright notice, you should include:
“Copyright, 2021, University of Oxford. All rights reserved"
As per the examples here: https://innovation.ox.ac.uk/university-members/commercialising-technology/ip-patents-licenses/software-copyright/.https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/38[documentation] Add link to GitLab Pages template2022-05-06T13:50:51+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] Add link to GitLab Pages template## I'm submitting a ...
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
There are some Jekyll templates for creating GitLab Pages sites, but they are only accessible if you know to look for them.
## Wh...## I'm submitting a ...
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
There are some Jekyll templates for creating GitLab Pages sites, but they are only accessible if you know to look for them.
## What is the expected/preferred behaviour?
Link the [beautiful Jekyll](https://git.fmrib.ox.ac.uk/open-science/community/beautiful-jekyll) [just-the-docs](https://git.fmrib.ox.ac.uk/open-science/community/just-the-docs) and [basic Jekyll](https://git.fmrib.ox.ac.uk/open-science/community/gitlab_pages_jekyll_template) templates from the [community gitlab pages](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/gitlab/).
## What is the motivation / use case for changing the behaviour?
Improves accessibility and knowledge sharing
## Other information
Be sure to include details on how to give feedback on the templates, i.e. as issues of MRs on the template repos themselves.https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/11[documentation] Benefits of Open Research2022-07-06T11:11:19+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] Benefits of Open Researchhttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/7[documentation] emojis2022-03-14T22:44:14+00:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] emojishttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/10[documentation] Fix typos2022-01-21T19:34:05+00:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] Fix typoshttps://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/40[documentation] GDPR => UK GDPR2022-05-06T14:07:25+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] GDPR => UK GDPR> Thank you for contributing to the Open WIN Community by providing feedback via this GitLab issue.
> Please fill in the details under each of the headings below to give your feedback. You may delete this text when you are done.
Note: F...> Thank you for contributing to the Open WIN Community by providing feedback via this GitLab issue.
> Please fill in the details under each of the headings below to give your feedback. You may delete this text when you are done.
Note: For support requests, please contact cassandra.gouldvanpraag@psych.ox.ac.uk.
## I'm submitting a ...
> Put an x in the appropriate square brackets
- [x] bug/error report
- [ ] feature request
## What is the current behaviour?
documentation currently refers to GDPR. As of 2022 year UK GDPR has passed equivalency testing and is now in use.
## What is the expected/preferred behaviour?
references to "GDPR" throughout the pages should be updated to "UK GDPR"
## What is the motivation / use case for changing the behaviour?
Stay current!
## Other information
[ISO guide](https://ico.org.uk/for-organisations/guide-to-data-protection/guide-to-the-general-data-protection-regulation-gdpr/)https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/29[documentation] links in gitlab guide are broken2022-01-21T19:33:16+00:00Bernd Taschler[documentation] links in gitlab guide are brokenRelated to #20.
Problem file: [gitlab-tutorials.md](https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/blob/master/docs/gitlab/gitlab-tutorials.md)
Error message for all main links on https://open.win.ox.ac.uk/page...Related to #20.
Problem file: [gitlab-tutorials.md](https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/blob/master/docs/gitlab/gitlab-tutorials.md)
Error message for all main links on https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/docs/gitlab/gitlab-tutorials/
(Interestingly, Table-of-contents links at the bottom of the site do work.)https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/20[documentation] Make gitlab guides more prominent2022-10-11T19:51:43+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] Make gitlab guides more prominentThink about where the gitlab tutorials should be. They are a bit hidden at the bottom of tools now. Perhaps "git and gitlab" should be their own section so they are really easy to find when people are on-boarding. Could also nest all the...Think about where the gitlab tutorials should be. They are a bit hidden at the bottom of tools now. Perhaps "git and gitlab" should be their own section so they are really easy to find when people are on-boarding. Could also nest all the pages under "tutorials" then... :)
To Do:
- [x] Move gitlab etc tutorials to its own section (alongside tools)
- [x] Add a gitlab sticker on how page
- [x] Think about whether stuff like "what to include in your repo" should be in the gitlab section rather than analysis. All gitlab mentions in other section should then link back to the main gitlab area.https://git.fmrib.ox.ac.uk/open-science/community/Open-WIN-Community/-/issues/49[documentation] Mirroring to GitHub2022-07-03T11:13:31+01:00Cassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk[documentation] Mirroring to GitHub
## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
It is often beneficial to host material on GitHub, for added external engagement. Th...
## I'm submitting a ...
> Put an x in the appropriate square brackets
- [ ] bug/error report
- [x] feature request
## What is the current behaviour?
It is often beneficial to host material on GitHub, for added external engagement. The recommenced way of doing this is to mirror your GitLab repository to GitHub. We should write guidance on how to do this.
## What is the expected/preferred behaviour?
Link to this guide: https://git.fmrib.ox.ac.uk/help/user/project/repository/mirror/index.mdCassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.ukCassandra Gould van Praagcassandra.gouldvanpraag@psych.ox.ac.uk