Commit bbbde1b2 authored by Cassandra Gould van Praag's avatar Cassandra Gould van Praag
Browse files

update links

parent f83e0c54
......@@ -33,7 +33,7 @@ We need researchers to walk through these documents with their existing or hypot
Take a look at these documents:
- [The decision tree](./docs/decision-tree.md)
- [Appendices and notes](./docs/WIN-data-sharing-decision-tree-Appendicies.md)
- [Appendices and notes](./docs/decision-tree-appendicies.md)
If you'd like to comment on these documents, please submit an [issues](https://git.fmrib.ox.ac.uk/open-science/data-sharing-decision-tree/-/issues) describing your feedback. We'll be in touch to discuss your suggestions further.
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......@@ -107,10 +107,7 @@ distributed openly.
## Appendix 4 - Quality Control
Quality control (QC) assessments should be completed as a matter of
course for research data, and as a courtesy for those wishing to reuse
your data. QC can be performed on BIDS formatted data using mriqc. Mriqc
is available as a container on XNAT.
Quality control (QC) assessments should be completed as a matter of course for research data, and as a courtesy for those wishing to reuse your data. QC can be performed on BIDS formatted data using mriqc. Mriqc is available as a container on XNAT.
<a name="deface"></a>
## Appendix 5 - Defacing
......@@ -189,8 +186,7 @@ be tailored to the specific needs of a particular project. Research
Services can advise on this, and also offer to check drafts as they are
prepared before producing a final signature-ready copy.
Example DUA from [Donders Repository]([https://data.donders.ru.nl/)
--------------------------------------------------------------------------------------------------
### Example DUA from [Donders Repository]([https://data.donders.ru.nl/)
I request access to the data collected in the digital repository of the
\<DEPARTMENT\>, part of the \<INSTITUTION\>, established at \<CITY\>,
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......@@ -29,7 +29,14 @@ principles](https://www.go-fair.org/fair-principles/)
## Process 3
*to-do: explanatory text here*
See also [Appendix 1](./decision-tree-appendicies.md#dicom-scrub), [Appendix 2](./decision-tree-appendicies.md#BIDS), [Appendix 3](./decision-tree-appendicies.md#json-scrub), [Appendix 4](./decision-tree-appendicies.md#qc), [Appendix 5](./decision-tree-appendicies.md#deface).
See also:
- [Appendix 1](./decision-tree-appendicies.md#appendix-1-DICOM-Headers-to-be-scrubbed)
- [Appendix 2](./decision-tree-appendicies.md#appendix-2-BIDS-Compliance)
- [Appendix 3](./decision-tree-appendicies.md#appendix-3-Scrubbing-json-files)
- [Appendix 4](./decision-tree-appendicies.md#appendix-4-Quality-Control)
- [Appendix 5](./decision-tree-appendicies.md#deface)
![](../img/p3.png)
<a name="metadata"></a>
......@@ -43,7 +50,11 @@ See also Appendix 1
## Process 5
*to-do: explanatory text here*
See also [Appendix 6](./decision-tree-appendicies.md#upload), [Appendix 7](./decision-tree-appendicies.md#data-freeze), [Appendix 8](./decision-tree-appendicies.md#doi), [Appendix 9](./decision-tree-appendicies.md#dua).
See also:
- [Appendix 6](./decision-tree-appendicies.md#appendix-6-Upload-to-XNAT)
- [Appendix 7](./decision-tree-appendicies.md#appendix-7-Data-freeze)
- [Appendix 8](./decision-tree-appendicies.md#appendix-8-Digital-object-identifiers-DOI)
- [Appendix 9](./decision-tree-appendicies.md#appendix-9-Data-usage-agreement-DUA)
![](../img/p5.png)
# References
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