- 30 Apr, 2022 4 commits
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Rezvan Farahibozorg authored
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Rezvan Farahibozorg authored
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Rezvan Farahibozorg authored
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Rezvan Farahibozorg authored
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- 09 Jul, 2021 2 commits
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Sam Harrison authored
Rather than replicating these in MATLAB, we now run the Python-based postprocessing routines for PROFUMO. This makes things considerably simpler, especially if we want to add features to postprocessing.
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Sam Harrison authored
Now print the full error message before continuing.
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- 18 Aug, 2020 1 commit
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Sam Harrison authored
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- 20 Apr, 2020 1 commit
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Sam Harrison authored
The aim of this argument is to initialise with a better split between PFMs / global noise. Interest is whether it is problematic when no global noise exists.
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- 12 Feb, 2020 1 commit
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Sam Harrison authored
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- 09 Dec, 2019 2 commits
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Sam Harrison authored
But robust to new / missing methods.
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Sam Harrison authored
Hopefully helpful for working out provenance of old results.
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- 08 Dec, 2019 4 commits
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Sam Harrison authored
Just more consistent with the way things are normally presented.
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Sam Harrison authored
New built-in `histogram` function is pretty decent.
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Sam Harrison authored
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Sam Harrison authored
Removes another hidden dependency.
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- 06 Dec, 2019 6 commits
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Sam Harrison authored
Too many tests! This simplifies things, and means we don't need to worry about changing to the external `dual_regression` interface.
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Sam Harrison authored
As per the convention for external calls to PROFUMO/MELODIC too.
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Sam Harrison authored
Keeps everything consistent, and relative performances easier to interpret.
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Sam Harrison authored
Testing what effect this has on methods - performance on amplitudes is currently very similar.
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Sam Harrison authored
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Sam Harrison authored
I.e. the correction proposed in the NAF2 paper.
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- 03 Dec, 2019 6 commits
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Sam Harrison authored
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Sam Harrison authored
This is not always max is best (e.g. the NAF2 plots), so we now explicitly plot the optimal value too.
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Sam Harrison authored
Now computes the proper `melodic` & `dual_regression` pipeline, which is a good sanity check.
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Sam Harrison authored
Make sure the NIfTI is at least a size that we can save.
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Sam Harrison authored
In essence, this commit moves some of the hard coded paths out of the helper functions and into `RunTests.m`, where things are a bit easier to track.
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Sam Harrison authored
Add within subject (i.e. to complement across subject).
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- 27 Nov, 2019 1 commit
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Sam Harrison authored
Now calculated relative to the ground truth interaction, just to make sure the baseline is a sensible one.
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- 26 Nov, 2019 1 commit
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Sam Harrison authored
I.e. the NAF2 stroy from Bijsterbosch et al., eLife, 2019.
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- 03 Oct, 2019 6 commits
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Sam Harrison authored
The mixing can induce amplitude changes, so we renormalise here before thresholding (and then add explicit variability later).
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Sam Harrison authored
Hasn't been failing, but makes consistent with MELODIC behaviour.
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Sam Harrison authored
Just adds annoying noise when editing with different editors, so fix all files at once...
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Sam Harrison authored
For some reason, not all versions of MATLAB propagate the zero maps through the `pinv()`. Therefore have to re-null the timecourses etc.
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Sam Harrison authored
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Sam Harrison authored
+ Add variability in amplitudes to simulations. + Test for this as part of scoring procedures. + Load inferred PROFUMO amplitudes.
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- 02 Oct, 2019 1 commit
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Sam Harrison authored
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- 01 Oct, 2019 1 commit
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Sam Harrison authored
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- 28 Sep, 2019 1 commit
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Sam Harrison authored
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- 26 Sep, 2019 2 commits
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Sam Harrison authored
Just makes it a bit harder :-)
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Sam Harrison authored
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