initial submission

4fbaf276 · Lea Roumazeilles · 4fbaf276 · 4fbaf276 · 4fbaf276 · 4fbaf276
Commit 4fbaf276 authored Apr 19, 2021 by Lea Roumazeilles
--- a/README.md
+++ b/README.md
+# project_primates_comps
+
+This repository contains processing code and result files associated with the following publication: 
+
+## Cortical morphology and white matter tractography of three phylogenetically distant primates: Evidence for a simian elaboration
+
+### Lea Roumazeilles, Frederik J. Lange, R. Austin Benn, Jesper L. R. Andersson, Mads Frost Bertelsen, Paul R Manger, Edmund Flach, Alexandre A. Khrapitchev, Katherine L. Bryant, Jérôme Sallet, Rogier B. Mars
+
+Explanations to use the scripts used for the results can be found in /scripts/scripts_README.md
+Some scripts call other scripts from MrCat toolbox available at: https://github.com/neuroecology/MrCat
+
+Raw data of the lemur and squirrel monkey will be made available on the Digital Brain Bank of the Wellcome Centre for Integrative Neuroimaging (https://open.win.ox.ac.uk/DigitalBrainBank/#/) upon acceptance of the paper. Macaque data are already available within PRIME-DE ((Milham et al. 2018); http://fcon_1000.projects.nitrc.org/indi/indiPRIME.html). The scripts used for preprocessing are available in MrCat (www.neuroecologylab.org, https://github.com/neuroecology/MrCat). MMORF is available as a Singularity image online (https://git.fmrib.ox.ac.uk/flange/mmorf_beta). The surface pipeline is available online (https://github.com/neurabenn/precon_all).
+
+## Data folder organisation
+
+Species could be: lemur, squirrel_monkey, macaque
+
+Data are organised as follow: 
+							  figures |--> recipes (figures created with the scripts provided)
+							  		  |--> templates (scene file to make figure 3)
+							  		  |--> tractography (scene file to make figure 5-8B)
+
+							  species |--> standard |--> t2_template, dti_iter_5b (both outputs of the template pipeline), mask for these images, dti_FA and dyads (average FA and principal direction in template space)
+
+									  |--> surface |--> midthickness and pial surface, normal and downsample for both hemisphere, medial wall mask (named midline), and visual, motor, frontal and granular masks
+
+									  |--> tractography |--> average tracts across subjects and surface average
+													    |--> protocols (tractography recipes, ilf and mdlf 'test' are for the control analysis)
--- a/figures/.DS_Store
+++ b/figures/.DS_Store
--- a/figures/recipes/.DS_Store
+++ b/figures/recipes/.DS_Store
--- a/figures/templates/surface_labels.scene
+++ b/figures/templates/surface_labels.scene
--- a/figures/tractography/all_tracts_surface.scene
+++ b/figures/tractography/all_tracts_surface.scene
--- a/lemur/.DS_Store
+++ b/lemur/.DS_Store
--- a/lemur/standard/dti_FA.nii.gz
+++ b/lemur/standard/dti_FA.nii.gz
--- a/lemur/standard/dti_iter_5b.nii.gz
+++ b/lemur/standard/dti_iter_5b.nii.gz
--- a/lemur/standard/dyads.nii.gz
+++ b/lemur/standard/dyads.nii.gz
--- a/lemur/standard/mask.nii.gz
+++ b/lemur/standard/mask.nii.gz
--- a/lemur/standard/t2_template.nii.gz
+++ b/lemur/standard/t2_template.nii.gz
--- a/lemur/surface/granular_l.func.gii
+++ b/lemur/surface/granular_l.func.gii
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="10242"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[granular_l]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[PaletteColorMapping]]></Name>
+         <Value><![CDATA[<PaletteColorMapping Version="1">
+   <ScaleMode>MODE_AUTO_SCALE_PERCENTAGE</ScaleMode>
+   <AutoScalePercentageValues>98.000000 2.000000 2.000000 98.000000</AutoScalePercentageValues>
+   <AutoScaleAbsolutePercentageValues>2.000000 98.000000</AutoScaleAbsolutePercentageValues>
+   <UserScaleValues>-100.000000 0.000000 0.000000 100.000000</UserScaleValues>
+   <PaletteName>fsl_yellow</PaletteName>
+   <InterpolatePalette>true</InterpolatePalette>
+   <InvertPalette>OFF</InvertPalette>
+   <DisplayPositiveData>true</DisplayPositiveData>
+   <DisplayZeroData>false</DisplayZeroData>
+   <DisplayNegativeData>false</DisplayNegativeData>
+   <ThresholdTest>THRESHOLD_TEST_SHOW_OUTSIDE</ThresholdTest>
+   <ThresholdType>THRESHOLD_TYPE_OFF</ThresholdType>
+   <ThresholdFailureInGreen>false</ThresholdFailureInGreen>
+   <ThresholdNormalValues>-1.000000 1.000000</ThresholdNormalValues>
+   <ThresholdMappedValues>-1.000000 1.000000</ThresholdMappedValues>
+   <ThresholdMappedAvgAreaValues>-1.000000 1.000000</ThresholdMappedAvgAreaValues>
+   <ThresholdDataName></ThresholdDataName>
+   <ThresholdRangeMode>PALETTE_THRESHOLD_RANGE_MODE_FILE</ThresholdRangeMode>
+   <ThresholdLowHighLinked>false</ThresholdLowHighLinked>
+   <ThresholdOutlineDrawingMode>OFF</ThresholdOutlineDrawingMode>
+   <ThresholdOutlineDrawingColor>WHITE</ThresholdOutlineDrawingColor>
+   <HistogramRangeMode>PALETTE_HISTOGRAM_RANGE_ALL</HistogramRangeMode>
+   <HistogramBarsVisible>true</HistogramBarsVisible>
+   <HistogramEnvelopeVisible>false</HistogramEnvelopeVisible>
+   <HistogramBarsColor>CUSTOM</HistogramBarsColor>
+   <HistogramEnvelopeColor>RED</HistogramEnvelopeColor>
+   <HistogramEnvelopeLineWidthPercentage>0.5</HistogramEnvelopeLineWidthPercentage>
+   <HistogramNumberOfBuckets>100</HistogramNumberOfBuckets>
+   <NumericFormatMode>AUTO</NumericFormatMode>
+   <PrecisionDigits>2</PrecisionDigits>
+   <NumericSubivisions>0</NumericSubivisions>
+   <ColorBarValuesMode>DATA</ColorBarValuesMode>
+   <ShowTickMarksSelected>false</ShowTickMarksSelected>
+</PaletteColorMapping>
+]]></Value>
+      </MD>
+   </MetaData>
+   <Data>eJzt3ckJwDAMBEB35tZSul9+J2AdDsyAvrsgFaAxAAAAAAAAAAAAAAAAIMsz34d4Xbt2XwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAOjz5V9M9E+R6s7Kvqquip7sjs7sP+WeyM67JWvnQYwFvhBeAw==</Data>
+</DataArray>
+</GIFTI>
--- a/lemur/surface/granular_r.func.gii
+++ b/lemur/surface/granular_r.func.gii
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexRight]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="10242"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[granular_r]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[PaletteColorMapping]]></Name>
+         <Value><![CDATA[<PaletteColorMapping Version="1">
+   <ScaleMode>MODE_AUTO_SCALE_PERCENTAGE</ScaleMode>
+   <AutoScalePercentageValues>98.000000 2.000000 2.000000 98.000000</AutoScalePercentageValues>
+   <AutoScaleAbsolutePercentageValues>2.000000 98.000000</AutoScaleAbsolutePercentageValues>
+   <UserScaleValues>-100.000000 0.000000 0.000000 100.000000</UserScaleValues>
+   <PaletteName>fsl_yellow</PaletteName>
+   <InterpolatePalette>true</InterpolatePalette>
+   <InvertPalette>OFF</InvertPalette>
+   <DisplayPositiveData>true</DisplayPositiveData>
+   <DisplayZeroData>false</DisplayZeroData>
+   <DisplayNegativeData>true</DisplayNegativeData>
+   <ThresholdTest>THRESHOLD_TEST_SHOW_OUTSIDE</ThresholdTest>
+   <ThresholdType>THRESHOLD_TYPE_OFF</ThresholdType>
+   <ThresholdFailureInGreen>false</ThresholdFailureInGreen>
+   <ThresholdNormalValues>-1.000000 1.000000</ThresholdNormalValues>
+   <ThresholdMappedValues>-1.000000 1.000000</ThresholdMappedValues>
+   <ThresholdMappedAvgAreaValues>-1.000000 1.000000</ThresholdMappedAvgAreaValues>
+   <ThresholdDataName></ThresholdDataName>
+   <ThresholdRangeMode>PALETTE_THRESHOLD_RANGE_MODE_FILE</ThresholdRangeMode>
+   <ThresholdLowHighLinked>false</ThresholdLowHighLinked>
+   <ThresholdOutlineDrawingMode>OFF</ThresholdOutlineDrawingMode>
+   <ThresholdOutlineDrawingColor>WHITE</ThresholdOutlineDrawingColor>
+   <HistogramRangeMode>PALETTE_HISTOGRAM_RANGE_ALL</HistogramRangeMode>
+   <HistogramBarsVisible>true</HistogramBarsVisible>
+   <HistogramEnvelopeVisible>false</HistogramEnvelopeVisible>
+   <HistogramBarsColor>CUSTOM</HistogramBarsColor>
+   <HistogramEnvelopeColor>RED</HistogramEnvelopeColor>
+   <HistogramEnvelopeLineWidthPercentage>0.5</HistogramEnvelopeLineWidthPercentage>
+   <HistogramNumberOfBuckets>100</HistogramNumberOfBuckets>
+   <NumericFormatMode>AUTO</NumericFormatMode>
+   <PrecisionDigits>2</PrecisionDigits>
+   <NumericSubivisions>0</NumericSubivisions>
+   <ColorBarValuesMode>DATA</ColorBarValuesMode>
+   <ShowTickMarksSelected>false</ShowTickMarksSelected>
+</PaletteColorMapping>
+]]></Value>
+      </MD>
+   </MetaData>
+   <Data>eJzt1LENwCAMBEBvltUYPROkAN5OcydR+t+FRRUAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAMC09Xy/qZ5k30RPd8dfu3flnmanM5N5yRtIZXVn3MyfzO7o+LMAAAAAAAAAAAAAAEh5AekMV0w=</Data>
+</DataArray>
+</GIFTI>
--- a/lemur/surface/lh.midthickness.10K.surf.gii
+++ b/lemur/surface/lh.midthickness.10K.surf.gii
--- a/lemur/surface/lh.midthickness.surf.gii
+++ b/lemur/surface/lh.midthickness.surf.gii
--- a/lemur/surface/lh.pial.10K.surf.gii
+++ b/lemur/surface/lh.pial.10K.surf.gii
--- a/lemur/surface/lh.pial.surf.gii
+++ b/lemur/surface/lh.pial.surf.gii
--- a/lemur/surface/midline_l.func.gii
+++ b/lemur/surface/midline_l.func.gii
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="10242"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[midline_l]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[PaletteColorMapping]]></Name>
+         <Value><![CDATA[<PaletteColorMapping Version="1">
+   <ScaleMode>MODE_USER_SCALE</ScaleMode>
+   <AutoScalePercentageValues>98.000000 2.000000 2.000000 98.000000</AutoScalePercentageValues>
+   <AutoScaleAbsolutePercentageValues>2.000000 98.000000</AutoScaleAbsolutePercentageValues>
+   <UserScaleValues>-100.000000 0.000000 0.000000 2.500000</UserScaleValues>
+   <PaletteName>Gray_Interp</PaletteName>
+   <InterpolatePalette>true</InterpolatePalette>
+   <InvertPalette>OFF</InvertPalette>
+   <DisplayPositiveData>true</DisplayPositiveData>
+   <DisplayZeroData>false</DisplayZeroData>
+   <DisplayNegativeData>true</DisplayNegativeData>
+   <ThresholdTest>THRESHOLD_TEST_SHOW_OUTSIDE</ThresholdTest>
+   <ThresholdType>THRESHOLD_TYPE_OFF</ThresholdType>
+   <ThresholdFailureInGreen>false</ThresholdFailureInGreen>
+   <ThresholdNormalValues>-1.000000 1.000000</ThresholdNormalValues>
+   <ThresholdMappedValues>-1.000000 1.000000</ThresholdMappedValues>
+   <ThresholdMappedAvgAreaValues>-1.000000 1.000000</ThresholdMappedAvgAreaValues>
+   <ThresholdDataName></ThresholdDataName>
+   <ThresholdRangeMode>PALETTE_THRESHOLD_RANGE_MODE_FILE</ThresholdRangeMode>
+   <ThresholdLowHighLinked>false</ThresholdLowHighLinked>
+   <ThresholdOutlineDrawingMode>OFF</ThresholdOutlineDrawingMode>
+   <ThresholdOutlineDrawingColor>WHITE</ThresholdOutlineDrawingColor>
+   <HistogramRangeMode>PALETTE_HISTOGRAM_RANGE_ALL</HistogramRangeMode>
+   <HistogramBarsVisible>true</HistogramBarsVisible>
+   <HistogramEnvelopeVisible>false</HistogramEnvelopeVisible>
+   <HistogramBarsColor>CUSTOM</HistogramBarsColor>
+   <HistogramEnvelopeColor>RED</HistogramEnvelopeColor>
+   <HistogramEnvelopeLineWidthPercentage>0.5</HistogramEnvelopeLineWidthPercentage>
+   <HistogramNumberOfBuckets>100</HistogramNumberOfBuckets>
+   <NumericFormatMode>AUTO</NumericFormatMode>
+   <PrecisionDigits>2</PrecisionDigits>
+   <NumericSubivisions>0</NumericSubivisions>
+   <ColorBarValuesMode>DATA</ColorBarValuesMode>
+   <ShowTickMarksSelected>false</ShowTickMarksSelected>
+</PaletteColorMapping>
+]]></Value>
+      </MD>
+   </MetaData>
+   <Data>eJzt2kEOgjAQBVBv5tU8uksTAtLS+UXwvYTNdOYPC0k3Ph4AAAAAAAAAAAAAsOf1zDzAORLfYuq7T+RWZ/5iVjojPX90dsZMT39l38j5Xv1bzX0NAAAAAAAAAKS0/o+n6jnrff5h58x9s3bdYUcy/0q51ZmVeVVZFTmjGSPzR2dnzPT0t/a29I2cb52t1Zc1PvZ+o3fYOXNfy3d/lT3pHcn8VHYitzqzMq8qqyKn9V5NzB+dbb0fR3b19Lf2Ju70rbO1+rIGAAAAAAAAAAAAAAAAAABAjzdcQMNz</Data>
+</DataArray>
+</GIFTI>
--- a/lemur/surface/midline_r.func.gii
+++ b/lemur/surface/midline_r.func.gii
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexRight]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="10242"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[midline_r]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[PaletteColorMapping]]></Name>
+         <Value><![CDATA[<PaletteColorMapping Version="1">
+   <ScaleMode>MODE_USER_SCALE</ScaleMode>
+   <AutoScalePercentageValues>98.000000 2.000000 2.000000 98.000000</AutoScalePercentageValues>
+   <AutoScaleAbsolutePercentageValues>2.000000 98.000000</AutoScaleAbsolutePercentageValues>
+   <UserScaleValues>-100.000000 0.000000 0.000000 2.500000</UserScaleValues>
+   <PaletteName>Gray_Interp</PaletteName>
+   <InterpolatePalette>true</InterpolatePalette>
+   <InvertPalette>OFF</InvertPalette>
+   <DisplayPositiveData>true</DisplayPositiveData>
+   <DisplayZeroData>false</DisplayZeroData>
+   <DisplayNegativeData>true</DisplayNegativeData>
+   <ThresholdTest>THRESHOLD_TEST_SHOW_OUTSIDE</ThresholdTest>
+   <ThresholdType>THRESHOLD_TYPE_OFF</ThresholdType>
+   <ThresholdFailureInGreen>false</ThresholdFailureInGreen>
+   <ThresholdNormalValues>-1.000000 1.000000</ThresholdNormalValues>
+   <ThresholdMappedValues>-1.000000 1.000000</ThresholdMappedValues>
+   <ThresholdMappedAvgAreaValues>-1.000000 1.000000</ThresholdMappedAvgAreaValues>
+   <ThresholdDataName></ThresholdDataName>
+   <ThresholdRangeMode>PALETTE_THRESHOLD_RANGE_MODE_FILE</ThresholdRangeMode>
+   <ThresholdLowHighLinked>false</ThresholdLowHighLinked>
+   <ThresholdOutlineDrawingMode>OFF</ThresholdOutlineDrawingMode>
+   <ThresholdOutlineDrawingColor>WHITE</ThresholdOutlineDrawingColor>
+   <HistogramRangeMode>PALETTE_HISTOGRAM_RANGE_ALL</HistogramRangeMode>
+   <HistogramBarsVisible>true</HistogramBarsVisible>
+   <HistogramEnvelopeVisible>false</HistogramEnvelopeVisible>
+   <HistogramBarsColor>CUSTOM</HistogramBarsColor>
+   <HistogramEnvelopeColor>RED</HistogramEnvelopeColor>
+   <HistogramEnvelopeLineWidthPercentage>0.5</HistogramEnvelopeLineWidthPercentage>
+   <HistogramNumberOfBuckets>100</HistogramNumberOfBuckets>
+   <NumericFormatMode>AUTO</NumericFormatMode>
+   <PrecisionDigits>2</PrecisionDigits>
+   <NumericSubivisions>0</NumericSubivisions>
+   <ColorBarValuesMode>DATA</ColorBarValuesMode>
+   <ShowTickMarksSelected>false</ShowTickMarksSelected>
+</PaletteColorMapping>
+]]></Value>
+      </MD>
+   </MetaData>
+   <Data>eJzt3csRwyAMBUB3ltZSeiYFOPwkQTy7M1yM9HBiOHNdLe9Xs2Sr7/tVjJ2/iVxV/3fVvqrYw9lrZJ7FrOyM3OjMyLyorIic1YyV/tnemb7RnozanrpWza/5kee9AwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAgPPsvFfC3RYA8Dwrd125C4teWXvi7t62qNyM/Z15fjLOaXTm7ryTcqL7K3pn+jLre2sjambmRr9LxWh5wppV6/X4l3Wy19idf1JudGZkXlRWRU52f0ZvZM9IfW/tSl3v/N0cAAAAAAAAAKf7AMZlALA=</Data>
+</DataArray>
+</GIFTI>
--- a/lemur/surface/motor_l.func.gii
+++ b/lemur/surface/motor_l.func.gii
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[PaletteNormalizationMode]]></Name>
+         <Value><![CDATA[NORMALIZATION_SELECTED_MAP_DATA]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="10242"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[motor_l]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[PaletteColorMapping]]></Name>
+         <Value><![CDATA[<PaletteColorMapping Version="1">
+   <ScaleMode>MODE_AUTO_SCALE_PERCENTAGE</ScaleMode>
+   <AutoScalePercentageValues>98.000000 2.000000 2.000000 98.000000</AutoScalePercentageValues>
+   <AutoScaleAbsolutePercentageValues>2.000000 98.000000</AutoScaleAbsolutePercentageValues>
+   <UserScaleValues>-100.000000 0.000000 0.000000 100.000000</UserScaleValues>
+   <PaletteName>fsl_blue</PaletteName>
+   <InterpolatePalette>true</InterpolatePalette>
+   <InvertPalette>OFF</InvertPalette>
+   <DisplayPositiveData>true</DisplayPositiveData>
+   <DisplayZeroData>false</DisplayZeroData>
+   <DisplayNegativeData>true</DisplayNegativeData>
+   <ThresholdTest>THRESHOLD_TEST_SHOW_OUTSIDE</ThresholdTest>
+   <ThresholdType>THRESHOLD_TYPE_OFF</ThresholdType>
+   <ThresholdFailureInGreen>false</ThresholdFailureInGreen>
+   <ThresholdNormalValues>-1.000000 1.000000</ThresholdNormalValues>
+   <ThresholdMappedValues>-1.000000 1.000000</ThresholdMappedValues>
+   <ThresholdMappedAvgAreaValues>-1.000000 1.000000</ThresholdMappedAvgAreaValues>
+   <ThresholdDataName></ThresholdDataName>
+   <ThresholdRangeMode>PALETTE_THRESHOLD_RANGE_MODE_FILE</ThresholdRangeMode>
+   <ThresholdLowHighLinked>false</ThresholdLowHighLinked>
+   <ThresholdOutlineDrawingMode>OFF</ThresholdOutlineDrawingMode>
+   <ThresholdOutlineDrawingColor>WHITE</ThresholdOutlineDrawingColor>
+   <HistogramRangeMode>PALETTE_HISTOGRAM_RANGE_ALL</HistogramRangeMode>
+   <HistogramBarsVisible>true</HistogramBarsVisible>
+   <HistogramEnvelopeVisible>false</HistogramEnvelopeVisible>
+   <HistogramBarsColor>CUSTOM</HistogramBarsColor>
+   <HistogramEnvelopeColor>RED</HistogramEnvelopeColor>
+   <HistogramEnvelopeLineWidthPercentage>0.5</HistogramEnvelopeLineWidthPercentage>
+   <HistogramNumberOfBuckets>100</HistogramNumberOfBuckets>
+   <NumericFormatMode>AUTO</NumericFormatMode>
+   <PrecisionDigits>2</PrecisionDigits>
+   <NumericSubivisions>0</NumericSubivisions>
+   <ColorBarValuesMode>DATA</ColorBarValuesMode>
+   <ShowTickMarksSelected>false</ShowTickMarksSelected>
+</PaletteColorMapping>
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[UniqueID]]></Name>
+         <Value><![CDATA[{87cad2e2-3f07-4b38-8bb7-b10de85a0c79}]]></Value>
+      </MD>
+   </MetaData>
+   <Data>eJzt2jEOgCAQBEB/5td8upWJhSjiIZ6ZSa5kL1BsxTQBAAAAAAAAAAAAAABAZst8PKP2tgzAXlQ3nHVNbQ/V9FZU/z3NGHH+7XOm/IYAAAAAAAAAAFdK/0YAgH+K/reYYXfGnXdluFfvO/XMbzEyu1Vk1pYHAAAAAAAAAAAAAAAAAHzVCq+kAjY=</Data>
+</DataArray>
+</GIFTI>