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Sean Fitzgibbon
fslpy
Commits
e01f95f8
Commit
e01f95f8
authored
Jun 10, 2020
by
Michiel Cottaar
Browse files
REF: remove wait
qstat should not be called regularly
parent
0c1673bc
Changes
1
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Inline
Side-by-side
fsl/utils/fslsub.py
View file @
e01f95f8
...
...
@@ -378,22 +378,6 @@ def output(job_id, logdir='.', command=None, name=None):
return
stdout
,
stderr
def
wait
(
job_ids
):
"""Wait for one or more jobs to finish
:arg job_ids: string or tuple of strings with jobs that should finish
before continuing
"""
start_time
=
time
.
time
()
for
job_id
in
_flatten_job_ids
(
job_ids
).
split
(
','
):
log
.
debug
(
'Waiting for job {}'
.
format
(
job_id
))
while
len
(
info
(
job_id
))
>
0
:
wait_time
=
min
(
max
(
1
,
(
time
.
time
()
-
start_time
)
/
3.
),
20
)
time
.
sleep
(
wait_time
)
log
.
debug
(
'Job {} finished, continuing to next'
.
format
(
job_id
))
log
.
debug
(
'All jobs have finished'
)
def
_flatten_job_ids
(
job_ids
):
"""
Returns a potentially nested sequence of job ids as a single comma-separated string
...
...
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