Commits · 56bf883496f0ed0d777b6a37856dce66492c76c6 · Sean Fitzgibbon / fslpy

11 Jun, 2020 7 commits
- Merge branch 'rel/3.2.0-prep' into 'master' · 56bf8834
  Paul McCarthy authored Jun 11, 2020
```
Rel/3.2.0 prep

See merge request fsl/fslpy!237
```
  56bf8834
- MNT: pre-release version bump · fd51b776
  Paul McCarthy authored Jun 11, 2020
  
  fd51b776
- DOC: changelog · 4d2f63eb
  Paul McCarthy authored Jun 11, 2020
  
  4d2f63eb
- Merge branch 'hold' into 'master' · 60308c4d
  Paul McCarthy authored Jun 11, 2020
```
Added new wait function called hold

See merge request fsl/fslpy!236
```
  60308c4d
- DOC: add hold function to documentation · e138ecd2
  Michiel Cottaar authored Jun 11, 2020
  
  e138ecd2
- BUG: default to run fsl_sub in full current environment · 15e66320
  Michiel Cottaar authored Jun 11, 2020
  
  15e66320
- ENH: new hold function · db9a3e6d
  Michiel Cottaar authored Jun 11, 2020
  
  db9a3e6d
10 Jun, 2020 9 commits
- Merge branch 'mnt/dataclasses' into 'master' · 1a506448
  Paul McCarthy authored Jun 10, 2020
```
Mnt/dataclasses

See merge request fsl/fslpy!235
```
  1a506448
- DOC: changelog · f824ddce
  Paul McCarthy authored Jun 10, 2020
  
  f824ddce
- CI: bring back py36 · 83cd63c6
  Paul McCarthy authored Jun 10, 2020
  
  83cd63c6
- MNT: dataclasses for py36 support · 6db1c783
  Paul McCarthy authored Jun 10, 2020
  
  6db1c783
- DOC: typo · 6705eeba
  Paul McCarthy authored Jun 10, 2020
  
  6705eeba
- Merge branch 'remove_wait' into 'master' · 343919a3
  Paul McCarthy authored Jun 10, 2020
```
Remove fslsub.wait

See merge request fsl/fslpy!234
```
  343919a3
- remove references of wait from tests, run.py and documentation · 1c006fda
  Michiel Cottaar authored Jun 10, 2020
  
  1c006fda
- ENH: add warning message if fslsub.info gets called more than 2 time · 38789e94
  Michiel Cottaar authored Jun 10, 2020
  
  38789e94
- REF: remove wait · e01f95f8
  Michiel Cottaar authored Jun 10, 2020
```
qstat should not be called regularly
```
  e01f95f8
07 Jun, 2020 2 commits
- DOC: added much more detailed documentation to SubmitParams · 0c1673bc
  Michiel Cottaar authored Jun 07, 2020
  
  0c1673bc
- ENH: update info to check multiple job IDs at once · 0ba5b9ea
  Michiel Cottaar authored Jun 06, 2020
  
  0ba5b9ea
21 May, 2020 4 commits
- Merge branch 'rel/3.1.0' into 'master' · 8d1ebf0a
  Paul McCarthy authored May 21, 2020
```
Rel/3.1.0

See merge request fsl/fslpy!232
```
  8d1ebf0a
- MNT: Bump nibabel (for fsl.data.cifti) [skip ci] · 82a7ed78
  Paul McCarthy authored May 21, 2020
  
  82a7ed78
- MNT: version · e43f7edd
  Paul McCarthy authored May 21, 2020
  
  e43f7edd
- DOC: changelog · 183400ab
  Paul McCarthy authored May 21, 2020
  
  183400ab
18 May, 2020 5 commits
- Merge branch 'rf/dtype' into 'master' · d614b30d
  Paul McCarthy authored May 18, 2020
```
Rf/dtype

See merge request fsl/fslpy!231
```
  d614b30d
- DOC: changelog · 50b9989a
  Paul McCarthy authored May 18, 2020
  
  50b9989a
- TEST: test default image object+file type · 0ceeb9ba
  Paul McCarthy authored May 18, 2020
  
  0ceeb9ba
- RF: Better support for nifti1/2 + FSLOUTPUTTYPE · f2ce0ed9
  Paul McCarthy authored May 18, 2020
  
  f2ce0ed9
- ENH: New Nifti.niftiDataType property · a33a8492
  Paul McCarthy authored May 18, 2020
  
  a33a8492
13 May, 2020 2 commits
- Merge branch 'dti_tree' into 'master' · 0c8a3325
  Paul McCarthy authored May 13, 2020
```
ENH: update DTI tree with more potential files

See merge request fsl/fslpy!230
```
  0c8a3325
- ENH: update DTI tree with more potential files · 242c1057
  Michiel Cottaar authored May 13, 2020
  
  242c1057
01 May, 2020 7 commits
- Merge branch 'enh_cifti' into 'master' · 45f2126f
  Paul McCarthy authored May 01, 2020
```
Basic CIFTI class with IO from/to NIFTI, GIFTI, and CIFTI

See merge request fsl/fslpy!226
```
  45f2126f
- TEST: added test for BrainStructure class · 973b4481
  Michiel Cottaar authored May 01, 2020
  
  973b4481
- BUG: add tests for extracting images/surface data · 4cd6c30b
  Michiel Cottaar authored May 01, 2020
  
  4cd6c30b
- BUG: test IO for CIFTI · bca18bf7
  Michiel Cottaar authored May 01, 2020
  
  bca18bf7
- TEST: added tests for reading NIFTI and GIFTI · 6910c699
  Michiel Cottaar authored May 01, 2020
```
also added more support for loading basenames without extensions
```
  6910c699
- BUG: set undefined axes to None · db21c20b
  Michiel Cottaar authored May 01, 2020
  
  db21c20b
- ENH: Initial proposal for CIFTI support · c95dacf1
  Michiel Cottaar authored Apr 16, 2020
  
  c95dacf1
23 Apr, 2020 2 commits

Merge branch 'speed_update' into 'master' · eba0a573
Paul McCarthy authored Apr 23, 2020
```
OPT: speeds up FileTree updating

See merge request fsl/fslpy!229
```
eba0a573

OPT: speeds up FileTree updating · 20166167

Michiel Cottaar authored Apr 23, 2020

Replaces deepcopy with a smarter copy implementation, which only copies the instance attributes.

This is a speedup of about 20x (and yes, the deepcopy was getting annoyingly slow in some of my code).

20166167

22 Apr, 2020 2 commits
- Merge branch 'enh/wsl' into 'master' · db453f52
  Paul McCarthy authored Apr 22, 2020
```
Enh/wsl

See merge request fsl/fslpy!228
```
  db453f52
- DOC: changelog · bdce436f
  Paul McCarthy authored Apr 22, 2020
  
  bdce436f