updated CLI to expose new features

README.md

@@ -132,18 +132,24 @@ You can register a Neurolucida chart file to a 2D-slide using the `CHART` subcom
 
 ```shell
 >> slider_app.py CHART -h   
-usage: slider_app.py CHART [-h] [--out <dir>] <chart> <slide> <slide-resolution>
+usage: slider_app.py CHART [-h] [--outdir <dir>] [--boundary_key <key>] [--justify <left-right>]
+                           [--config <config.yaml>]
+                           <chart> <slide> <slide-resolution>
 
 Register charting to 2D slide
 
 positional arguments:
-  <chart>             Neurolucida chart file
-  <slide>             Fixed slide
-  <slide-resolution>  Slide image resolution (mm)
+  <chart>                 Neurolucida chart file
+  <slide>                 Fixed slide
+  <slide-resolution>      Slide image resolution (mm)
 
 optional arguments:
-  -h, --help          show this help message and exit
-  --out <dir>         Output directory 
+  -h, --help              show this help message and exit
+  --outdir <dir>          Output directory
+  --boundary_key <key>    Name of boundary contour in chart
+  --justify <left-right>  Justify chart bounding-box to the left/right of the image bounding box.
+                          Useful when only one hemisphere is charted.
+  --config <config.yaml>  configuration file
   ```
 
 For example: