Fixed bug where output directory was not created

slider/chart_reg.py

@@ -50,6 +50,10 @@ def register_chart_to_slide(chart, slide, slide_res, out, config=None):
 
     global OUTDIR
     OUTDIR = out
+
+    #  create output dir
+    if not op.exists(out):
+        os.makedirs(out)
         
     # load chart
     contour, cells = neurolucida.read(chart)
@@ -82,9 +86,6 @@ def register_chart_to_slide(chart, slide, slide_res, out, config=None):
         f'Rotation:\t{opt.rotation}\nTranslation:\t{opt.translation}\nScale:\t\t{list(opt.scale)}\nShear:\t\t{opt.shear}')
 
     # save opt transform
-    if not op.exists(out):
-        os.makedirs(out)
-
     np.savetxt(f'{out}/chart-to-image.xfm', opt.params)
 
     # apply opt-xfm to contours and cells and save