Commits · master · Sean Fitzgibbon / SlideR 🍔

28 Jan, 2022 6 commits
- Merge branch 'new_chart_reg' into 'master' · 8370ebaf
  Sean Fitzgibbon authored Jan 28, 2022
```
Improved chart-to-slide registration

See merge request !2
```
  8370ebaf
- updated CLI to expose new features · b896788f
  Sean Fitzgibbon authored Jan 28, 2022
  
  b896788f
- updated CLI to support new features · 25456ad8
  Sean Fitzgibbon authored Jan 28, 2022
  
  25456ad8
- Forgot to at left justification · dac5ed76
  Sean Fitzgibbon authored Jan 28, 2022
  
  dac5ed76
- added left or right justification · b67fd752
  Sean Fitzgibbon authored Jan 28, 2022
  
  b67fd752
- Improved plotting · bda1c201
  Sean Fitzgibbon authored Jan 28, 2022
  
  bda1c201
27 Jan, 2022 3 commits
- some refactoring · e0fbbfe3
  Sean Fitzgibbon authored Jan 27, 2022
  
  e0fbbfe3
- Added support of multiple boundary contours · 1934cca3
  Sean Fitzgibbon authored Jan 27, 2022
  
  1934cca3
- Added support for extended chart to chart_reg · f76a6878
  Sean Fitzgibbon authored Jan 27, 2022
  
  f76a6878
26 Jan, 2022 5 commits
- bugfix · 3ced85c3
  Sean Fitzgibbon authored Jan 26, 2022
  
  3ced85c3
- accomodate more point style · 2b2543ea
  Sean Fitzgibbon authored Jan 26, 2022
  
  2b2543ea
- minor refactor · 2fcd1b9a
  Sean Fitzgibbon authored Jan 26, 2022
  
  2fcd1b9a
- neurolucida ascii parser extracts more fields · b2e7cb71
  Sean Fitzgibbon authored Jan 26, 2022
```
color, closed, guid, resolution
```
  b2e7cb71
- Initial commit of new chart_reg · 395170ba
  Sean Fitzgibbon authored Jan 26, 2022
  
  395170ba
22 Dec, 2021 2 commits
- more closing options · 3f1720fd
  Sean Fitzgibbon authored Dec 22, 2021
  
  3f1720fd
- added untested binary closing option · 1b4d3256
  Sean Fitzgibbon authored Dec 22, 2021
  
  1b4d3256
21 Dec, 2021 3 commits
- Added additional preprocessing to _img_props · b8babe87
  Sean Fitzgibbon authored Dec 21, 2021
  
  b8babe87
- changed affine to rigid · 410f89aa
  Sean Fitzgibbon authored Dec 21, 2021
  
  410f89aa
- bugfix in neurolucida reader · dfcb8b76
  Sean Fitzgibbon authored Dec 21, 2021
  
  dfcb8b76
05 Nov, 2021 1 commit
- Added support for other file formats to APPLYXFM · 8c599e4c
  Sean Fitzgibbon authored Nov 05, 2021
  
  8c599e4c
04 Nov, 2021 2 commits
- Added improved masking and some temporary debugging code · f7da6821
  Sean Fitzgibbon authored Nov 04, 2021
  
  f7da6821
- corrected input data types in config · 944d74f5
  Sean Fitzgibbon authored Nov 04, 2021
  
  944d74f5
03 Aug, 2021 4 commits
- added config with masking · de99b27e
  Sean Fitzgibbon authored Aug 03, 2021
  
  de99b27e
- exposed nonlinear maskmode to config · 08b9a447
  Sean Fitzgibbon authored Aug 03, 2021
  
  08b9a447
- tweaked default export options · 92e06e96
  Sean Fitzgibbon authored Aug 03, 2021
  
  92e06e96
- Added ability not to save intermediate TIMGs · 227994d2
  Sean Fitzgibbon authored Aug 03, 2021
  
  227994d2
02 Aug, 2021 1 commit
- updated some defaults · ca926c2c
  Sean Fitzgibbon authored Aug 02, 2021
  
  ca926c2c
29 Jul, 2021 6 commits
- Allow for repeat contours in neurolucida · 31b0b619
  Sean Fitzgibbon authored Jul 29, 2021
  
  31b0b619
- Fixed bug where BATCH might run SLIDE instead of APPLXFM · d1a2884e
  Sean Fitzgibbon authored Jul 29, 2021
  
  d1a2884e
- Added more files to be ignored · 221215a4
  Sean Fitzgibbon authored Jul 29, 2021
  
  221215a4
- Added support for masking using GMM · 64d74cdd
  Sean Fitzgibbon authored Jul 29, 2021
  
  64d74cdd
- fixed some help info · c6508b74
  Sean Fitzgibbon authored Jul 29, 2021
  
  c6508b74
- Add extension to outname if required · 5550deda
  Sean Fitzgibbon authored Jul 29, 2021
  
  5550deda
13 Jul, 2021 1 commit
- reformatting - no code changes · ff65be41
  Sean Fitzgibbon authored Jul 13, 2021
  
  ff65be41
29 Jun, 2021 1 commit
- Merge branch 'report' into 'master' · eb4d5877
  Sean Fitzgibbon authored Jun 29, 2021
```
Report

See merge request !1
```
  eb4d5877
24 Jun, 2021 3 commits
- Fixed bug where output directory was not created · cf4f1fd1
  Sean Fitzgibbon authored Jun 24, 2021
  
  cf4f1fd1
- Initial support of reporting · 08b157e8
  Sean Fitzgibbon authored Jun 24, 2021
  
  08b157e8
- Added alignment plot to slide_reg · b235e4ad
  Sean Fitzgibbon authored Jun 24, 2021
  
  b235e4ad
23 Jun, 2021 2 commits
- Updated README · c51b8c53
  Sean Fitzgibbon authored Jun 23, 2021
  
  c51b8c53
- Add resolution level to APPLYXFM · b9f4248e
  Sean Fitzgibbon authored Jun 23, 2021
  
  b9f4248e