Commit cc89a441 authored by Taylor Hanayik's avatar Taylor Hanayik
Browse files

update readme

parent 2eae552c
......@@ -101,6 +101,22 @@ optional arguments:
-v V the path to the variants file
```
Here's what a the new files look like when they have been properly prepared for input to `pheweb`:
HEAD:
```
chrom pos ref alt beta sebeta pval maf af
1 10177 A AC -0.001157 0.014236 0.9352226147136065 0.400522 0.400522
1 10352 T TA -0.0020071 0.014645 0.8909924008180645 0.39659 0.39659
1 10511 G A -0.08748 0.19528 0.6541690605965481 0.0013354 0.0013354
1 10616 CCGCCGTTGCAAAGGCGCGCCG C 0.073579 0.091994 0.4238185877576885 0.005900000000000016 0.9941
1 11008 C G -0.033773 0.024695 0.17143914810708835 0.084682 0.084682
1 11012 C G -0.033773 0.024695 0.17143914810708835 0.084682 0.084682
1 13110 G A 0.058805 0.033066 0.07535290502354003 0.057932 0.057932
1 13116 T G 0.014839 0.019169 0.4388842542088913 0.1889 0.1889
1 13118 A G 0.014839 0.019169 0.4388842542088913 0.1889 0.1889
```
# Make pheno-list.json
We need to generate the `pheweb` `pheno-list.json` file. This should be done after converting from Steve and Lloyd format to an acceptable pheweb format (see the above step).
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment