Commit 15f8ef19 authored by Saad Jbabdi's avatar Saad Jbabdi
Browse files

tyding up

parent 016080b8
......@@ -18,7 +18,7 @@ To get the packaged example data, make sure [git-lfs](
pip install spec2nii
After installation see the [quick start guide](
After installation see the [quick start guide](
......@@ -27,11 +27,11 @@ After installation see the [quick start guide](
#### Scripts:
- **fsl\_mrs**
: fit a single spectrum
: fit a single voxel spectroscopy (SVS) spectrum
- **fsl\_mrsi**
: fit a 3D volume of 1D spectra
- **fsl\_mrs\_proc**
: pre-processing (coil combination, averaging, eddy-current correction)
: pre-processing (coil combination, averaging, phase correction, outlier rejection, water suppression, eddy-current correction)
- **fsl\_mrs\_preproc**
: Pre-packaged processing for non-edited SVS.
- **fsl\_mrs\_sim**
......@@ -49,7 +49,7 @@ For each of the wrapper scripts above, simply type `<name_of_script> --help` to
Example command-line usage is demonstrated in the packaged [Jupyter Notebook](
Documentation can be found online [here](
Documentation can be found online [here](
### File types
......@@ -67,7 +67,9 @@ If you don't want to use the wrapper scripts, you can use the python modules dir
If you use FSL-MRS in your research please cite:
Please see the LICENSE file for licensing information.
Clarke WT, Jbabdi S. FSL-MRS: An end-to-end spectroscopy analysis package. Biorxiv 2020
Please see the [LICENSE]( file for licensing information.
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