Commit 190aa9b0 authored by William Clarke's avatar William Clarke
Browse files

Update readme.

parent 5547e2ab
......@@ -53,7 +53,7 @@ After installation see the [quick start guide](https://open.win.ox.ac.uk/pages/f
- **mrs_vis**
: quick visualisation of the spectra or basis spectra
- **mrs_info**
: quick information on NIfTI MRS file
: quick information on a NIfTI-MRS file
- **svs_segment & mrsi_segment**
: Run tissue segmentation for SVS/MRSI from T1 image.
......@@ -69,9 +69,9 @@ Example command-line usage is demonstrated in the packaged [Jupyter Notebook](ht
### File types
FSL-MRS accepts FID data in NIfTI + JSON format. Some scripts can also read .RAW (LCModel) and text (jMRUI).
FSL-MRS accepts FID data in NIfTI-MRS format. Some scripts can also read .RAW (LCModel) and text (jMRUI).
Conversion to NIfTI is provided by [spec2nii](https://github.com/wexeee/spec2nii).
Conversion to NIfTI-MRS is provided by [spec2nii](https://github.com/wexeee/spec2nii).
### Working in python
......@@ -83,7 +83,8 @@ If you don't want to use the wrapper scripts, you can use the python modules dir
If you use FSL-MRS in your research please cite:
Clarke WT, Stagg CJ, Jbabdi S. FSL-MRS: An end-to-end spectroscopy analysis package. Biorxiv 2020
Clarke WT, Stagg CJ, Jbabdi S. FSL-MRS: An end-to-end spectroscopy analysis package. Magnetic Resonance in Medicine 2021;85:2950–2964 doi: https://doi.org/10.1002/mrm.28630.
Please see the [LICENSE](https://git.fmrib.ox.ac.uk/saad/fsl_mrs/-/blob/master/LICENSE) file for licensing information.
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