Explore projects

Code to accompany Shi, Clare, Vannesjo (2021) Magnetic Resonance In Medicine

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

WIN Tasks Sharing Workshop. Served at https://open.win.ox.ac.uk/pages/open-science/education/win-task-sharing-workshop

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Repository for code and materials from 'A macroscopic link between tract myelination and tract physiology during action reprogramming' by Lazari et al.

Matlab code to perform Hidden Markov modelling of entorhinal cortex optogenetic-fMRI.

Latex code repo for various write-ups done during my DPhil

Beta version of MMORF for internal FMRIB release.

The FSL Python Library

Code to accompany Uncertainty in denoising of MRSI using low rank methods, Clarke WT and Chiew M 2021.

This repository contains the E-Prime script and stimuli from the functional MRI task for the UK Biobank Brain Imaging study.

Reads Siemens .dat 'twix' raw data files. Python port of Philipp Ehses' Matlab tool mapVBVD.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.